PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g027050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 453aa    MW: 51793.1 Da    PI: 6.5099
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g027050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix859.3e-27124218185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                     +Wt+++v++Li+a++++++++  ++         +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++
  Csa17g027050.1 124 KWTDKMVKLLITAVSYIGDDSTMDSgsrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDSI 218
                     7**************8877777654456677888**********************************************669999998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-24122245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDTNFPQGGV VRGGASSSYG GFDLQGGSMR IHHQDSMNQH RHNPNSRPLH EGLPFTMVTG  60
QQTCDHHHHH QNMSVTEQHK GERDKNNSVS DDDEPSFTEE GCGGDGHNNE ANKSTKGSPW  120
QRVKWTDKMV KLLITAVSYI GDDSTMDSGS RRKFAVLQKK GKWKSVSKVM AERGYHVSPQ  180
QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPALLDSIGY LNDKEKDDVR KIMSSKHLFY  240
EEMCSYHNGN RLHLPHDLAL QRSLQLALRN RDEHDNEESR KHQMEDLDDE DHDGEGDEHD  300
EYEEQHYSHG DCRGIHYGGG GGGGGPLKKI RQSHSHEDAD HPSHVNSLEC SKGNLPQMPF  360
SQGDVNQGGV ESGRAASMQK QWMESRTLQL EEQKLQIQVE LLELEKQRFR WQRFSKKRDQ  420
ELERMRMENE RMKLENDRMG LELKQRELGV DL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g027050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458500.0AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankAY0913780.0AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16F40.0AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477381.10.0PREDICTED: uncharacterized protein LOC104756477
TrEMBLR0GX820.0R0GX82_9BRAS; Uncharacterized protein
STRINGXP_010477381.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.10.0sequence-specific DNA binding transcription factors