PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g024820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 285aa    MW: 31230.8 Da    PI: 6.5343
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g024820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.7e-13106150347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+++++ + ++ G+g+Wk I+r + k Rt+ q+ s+ qky
   Csa17g024820.1 106 PWTENEHKRFLIGLQKVGKGDWKGISRNFVKSRTPTQVASHAQKY 150
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.72499155IPR017930Myb domain
SuperFamilySSF466891.27E-16101155IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-17102153IPR006447Myb domain, plants
SMARTSM007171.1E-6103153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-10105150IPR009057Homeodomain-like
CDDcd001671.85E-6106151No hitNo description
PfamPF002492.3E-9106150IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAAVSSSSET GDSGAVVKRD EIMLFGVRVV VDPMRKCVSL NNLSDYEQKS SPDDDQIPKL  60
LVAAGEDKNE ADATTVILAD GYASANDAVH ISSSSGGNRE RKRGVPWTEN EHKRFLIGLQ  120
KVGKGDWKGI SRNFVKSRTP TQVASHAQKY FLRRTNLNRR RRRSSLFDIT TETVTDMPME  180
QDQAQENSPL PETNIMSRAE VAVPTKIETS PQQTFNLNDS YLVPVTFQAN PAFNLSTDAA  240
PLSLNLSLAS SFNLNEQPNS RHSAFTMMPS FSDGDSNSSI IRVA*
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g024820.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477103.10.0PREDICTED: transcription factor MYB1R1-like
SwissprotQ2V9B04e-59MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLR0IPK71e-154R0IPK7_9BRAS; Uncharacterized protein
STRINGXP_010477103.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.21e-142MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]