PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g023270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 296aa    MW: 32877.6 Da    PI: 9.3713
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g023270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I r         +R+  ++k++w+++
   Csa17g023270.1  5 KLKWTAEEEEALLAGVRKHGPGKWKNILRDPEfdgqlSNRSNIDLKDKWRNL 56
                     689***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.638162IPR017930Myb domain
SuperFamilySSF466893.37E-16359IPR009057Homeodomain-like
SMARTSM007179.2E-9459IPR001005SANT/Myb domain
PfamPF002491.8E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-14556IPR009057Homeodomain-like
CDDcd116601.39E-21756No hitNo description
SuperFamilySSF467851.47E-14123208IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.7E-15123188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.1E-11124192IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.082125199IPR005818Linker histone H1/H5, domain H15
PfamPF005382.1E-9127197IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGNQKLKWTA EEEEALLAGV RKHGPGKWKN ILRDPEFDGQ LSNRSNIDLK DKWRNLSVAP  60
GIQGSKDKIR TPKIKAAAFD LASAAAAATV NHIPNAIPSP VAKLIRKVSS ENIEEFCNIV  120
VDAKNVPRYD GMIFEALSAL TDVNGSDVSA IYNCIEQRHG APPNFRRMLS SRLRRLAAQG  180
KLEKVSHLKS TQNFYKMNDN SLVPRTPQVA RPKETNPKPR QTHSQGPSIS QEMVGEASIT  240
AAYKLVEVEN KLDVVKGSSE EIERMMNLAR QAEYMLVIAR EMHEECCQGN IMFLD*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g023270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1185330.0AK118533.1 Arabidopsis thaliana At1g17520 mRNA for putative myb-related DNA-binding protein, complete cds, clone: RAFL19-76-F04.
GenBankAY5195380.0AY519538.1 Arabidopsis thaliana MYB transcription factor (At1g17520) mRNA, complete cds.
GenBankBT0052900.0BT005290.1 Arabidopsis thaliana At1g17520 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476906.10.0PREDICTED: telomere repeat-binding factor 4-like isoform X2
SwissprotF4I7L11e-148TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLR0I3W91e-161R0I3W9_9BRAS; Uncharacterized protein
STRINGXP_010476905.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-149MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]