PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g020050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | G2-like | ||||||||
Protein Properties | Length: 256aa MW: 29063.3 Da PI: 8.1486 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.7e-32 | 24 | 77 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+av+ LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR Csa17g020050.1 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77 8****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.375 | 20 | 80 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-29 | 20 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.23E-15 | 24 | 76 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-22 | 24 | 76 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-8 | 25 | 76 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGRCGRSSDG GIGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV 60 KGLTISHVKS HLQMYRGSRV SLLGKPEESS SPSSRRRRRQ DNEEDHLHDN LSVHARNDCL 120 LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHFLE AESTKNNWKN 180 TWRENEQQEE EELSLSLSLN HPQNIQQRWR SNATSSLSET SEAVSSSSAP FIFRDCFASS 240 KIDLNLNLSF SLLRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-19 | 25 | 79 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-19 | 25 | 79 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-20 | 25 | 79 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-20 | 25 | 79 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-20 | 25 | 79 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-20 | 25 | 79 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-19 | 25 | 79 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-19 | 25 | 79 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-19 | 25 | 79 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-19 | 25 | 79 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-19 | 25 | 79 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-19 | 25 | 79 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g020050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ630486 | 0.0 | AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010476522.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 isoform X1 | ||||
Swissprot | Q700D9 | 1e-146 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | D7KBM4 | 1e-150 | D7KBM4_ARALL; DNA binding protein | ||||
STRING | XP_010476522.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4694 | 18 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 1e-132 | G2-like family protein |