PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g016750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 259aa    MW: 29326.6 Da    PI: 8.8194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g016750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-1372124155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +r++h+ +Er+RR++  s +  Lr llP+      ++K s ++ +e+A +YIk+Lq
  Csa17g016750.1  72 KRAKHKDIERQRRQEAASLYKSLRYLLPSqY---IKGKRSSSDHVEEAANYIKDLQ 124
                     79***************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-1368143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.75E-969128No hitNo description
PROSITE profilePS5088812.96371123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-972142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1072124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDFANSSLFT LDFSHEKDLD FSSLVTSSRL ISFQEPNPII HCAGIQKDGR QKVCETTITS  60
EIRKGVDEPK NKRAKHKDIE RQRRQEAASL YKSLRYLLPS QYIKGKRSSS DHVEEAANYI  120
KDLQKKIKVI SEKRDRIKRT ITHRSSTSKC STRSLASSPS STCSCIGDTH MAVVVSPCLI  180
GLEIVVSCCY RHESFLSSVL QLLAQEQCLN VVSCISTRQP QRIIHTIISE VEDGVEVYFP  240
EIHEKIMKMG RSSYVYLY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17183KRAKHKDIERQRR
2123138QKKIKVISEKRDRIKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g016750.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480445.20.0PREDICTED: transcription factor bHLH55-like
SwissprotQ9LN951e-127BH055_ARATH; Transcription factor bHLH55
TrEMBLR0I2Y41e-137R0I2Y4_9BRAS; Uncharacterized protein
STRINGXP_010480445.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-120bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]