PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g013740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 372aa    MW: 40514.9 Da    PI: 5.7896
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g013740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-10220268355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Csa17g013740.1 220 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 268
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-17215285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-11215272No hitNo description
PROSITE profilePS5088815.485217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-17218285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7220268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10223273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGGESNEGEM GFKHGDDESG ISRVGITPMP PLYAKADPFF SSADWDPVVN GGGGGGGGFS  60
SSNYHPSMGM DNPGMSCFSH YQPGSGSGYA AEMPHSLLPF GDCGGGQIGH FLGSDKKGES  120
VARLIRAGES HDDHHQVSDD GGVLGASPIG KRRQPEAESQ WNKKAVEEFQ EDPQRGSDQS  180
QKKHKNDQSK ETVNKESSQS EEAPKENYIH MRARRGQATN SHSLAERVRR EKISERMRLL  240
QELVPGCNKI TGKAVMLDEI INYVQSLQQQ VEFLSMKLAT VNPEINIDID RILAKDLLQS  300
RDRNTPTLGL NPFTGFQGTI PNLSTTTNPQ YNSLPQTTLE SELQNLYQMG FVSNPSTMSS  360
FSPNGRLKPE L*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g013740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2218060.0AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBankBT0126550.0BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475871.10.0PREDICTED: transcription factor bHLH74-like
SwissprotQ6NKN90.0BH074_ARATH; Transcription factor bHLH74
TrEMBLR0I6X00.0R0I6X0_9BRAS; Uncharacterized protein
STRINGXP_010475871.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]