PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa17g005560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 28026.8 Da PI: 9.701 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 70.9 | 3.4e-22 | 9 | 133 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkev 92 +G rF P+d lv + L++ ve+k+ ++ i+++d+y++ePw Lp+ v++ ++kewy+F+++ + +++ + + r k+g+W++ ++ e+ Csa17g005560.1 9 VGSRFVPNDLVLV-RQLRNMVERKQSSV--GITTMDVYQAEPWLLPH-VSNplfKKKEWYYFVPKFRDKRSsRSVPGRgGSKAGFWRSGVTKIEI 99 79***********.66********9777..6***************4.233355889******9988765425567777799*********9*** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++ +++ +g kk L++++ + k++ tdW m ey Csa17g005560.1 100 KD-GNKIIGYKKPLTYHTLVHGKAKPTDWRMTEYY 133 99.999***********999999999*******95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.15 | 7 | 150 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.59E-25 | 7 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-11 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MGKPYHHLVG SRFVPNDLVL VRQLRNMVER KQSSVGITTM DVYQAEPWLL PHVSNPLFKK 60 KEWYYFVPKF RDKRSSRSVP GRGGSKAGFW RSGVTKIEIK DGNKIIGYKK PLTYHTLVHG 120 KAKPTDWRMT EYYRVDEGFQ NLVLCLIRDK TKTKVDKRIN HVPQTQTQPG PHSQYQLQPQ 180 PQVAAENTNN ILPNQLVHKE ADFTGFAEEL ETIMLEGQEE RDATEQQQEE EIPQIHDKTT 240 TS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa17g005560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010480332.2 | 1e-168 | PREDICTED: uncharacterized protein LOC104759060 | ||||
TrEMBL | R0I9X6 | 1e-87 | R0I9X6_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010480332.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14544 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03490.1 | 2e-33 | NAC domain containing protein 6 |