PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g004030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 314aa    MW: 33905.5 Da    PI: 6.9679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g004030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.8e-09166210554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  Csa17g004030.1 166 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 210
                     99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14159220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14163220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6166210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MANNNNNPHD NISDPSPTDD FFEQILGLSN FSASSGSGLS GIGGGLSAPP MMLQLGGSVG  60
DEGNHHHNNH NMGAIGGGPG PVGFHNHMFP LGLSLDQGKG HGFLKPEGLL PSRKRFQDDV  120
VDNRCSSIKP VYHGQPMSQP APPMPHQQST IRPRVRARRG QATDPHSIAE RLRRERIAER  180
IRALQELVPT VNKTDRAAMI DEIVDYVKFL RLQVKVLSMS RLGGAGAVAP LVTEMPLSSS  240
IEDETQAVWE KWSNDGTERQ VAKLMEENVG AAMQLLQSKA LCIMPISLAM AIYHSQPPDT  300
SSSIVKPEMN PPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g004030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516920.0AF251692.2 Arabidopsis thaliana putative transcription factor BHLH7 mRNA, complete cds.
GenBankAY0544690.0AY054469.1 Arabidopsis thaliana Unknown protein (At1g03040; F10O3.14) mRNA, complete cds.
GenBankAY1146330.0AY114633.1 Arabidopsis thaliana unknown protein (At1g03040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474907.10.0PREDICTED: transcription factor bHLH7-like
SwissprotQ93Y001e-169BH007_ARATH; Transcription factor bHLH7
TrEMBLR0IIQ61e-179R0IIQ6_9BRAS; Uncharacterized protein
STRINGXP_010474907.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-156bHLH family protein