PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g001730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 600aa MW: 66851.9 Da PI: 6.7931 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.7e-13 | 442 | 487 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ + K++Ka+ L Av YI++L Csa17g001730.1 442 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 487 799***********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.7E-51 | 49 | 237 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.326 | 438 | 487 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.95E-19 | 441 | 507 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.39E-14 | 441 | 492 | No hit | No description |
Pfam | PF00010 | 2.0E-10 | 442 | 487 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-18 | 442 | 501 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-16 | 444 | 493 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MNNIGGVVWN EDDKAIIASL LGKRALDYLL SNSVPNANLL MTVGSDDNLQ NKLSDLVERP 60 NSCNFSWNYA IFWQISRSKS GDLVLCWGDG SCREPKQGEK SDIVRILSMG REEETYQTMR 120 KRVLQKLHAM FGESEEDNCA LGLDRVTDTE MFLLSSMYFS FPRGEGGPGK CFSSGKPLWL 180 SDVVNSGSDY CVRSFLAKSA GIQTIVLVPT DIGVVELGST SCLPESEESM LSIRSLFSSS 240 LPPVRTLPAV ALPVAEKIDD NRTVTASKIF GKDLHSSGFL HQHHQQQPHQ QQQQQQQQHR 300 QFREKLTVRK MDDRAPKRLD AYPNNNGNRF MFANPGNNNN NNTLLSPTWV QPESYVRTNS 360 VKEVPSKEEF KFLPLQQSSQ KLLPPAQMQI DFSAASSRAS ENNSDGEGGP EWADTVGADE 420 SGNNRPRKRG RRPANGRAEA LNHVEAERQR REKLNQRFYA LRSVVPNISK MDKASLLGDA 480 VSYINELHAK LKVMEAERER LGYSSNPPIS LDSDINVQTS GEDVTVRINC PLESHPASRI 540 FHAFEESKVE VVNSNLEVSQ DTVLHTFVVK SEELTKEKLL SALSREQSSS VQSRTSSGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-26 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 4e-26 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 4e-26 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 4e-26 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 4e-26 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 4e-26 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 4e-26 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 4e-26 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g001730.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010474717.1 | 0.0 | PREDICTED: transcription factor bHLH13-like | ||||
Swissprot | Q9LNJ5 | 0.0 | BH013_ARATH; Transcription factor bHLH13 | ||||
TrEMBL | R0IMU8 | 0.0 | R0IMU8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010474717.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3758 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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