PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g001330.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 692aa MW: 79647.6 Da PI: 4.4605

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g001330.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	69.5	8.8e-22	7	131	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknra......tksgyWkatgkdkev 92 ++F P+d l ++yL+++++++k +ik++++y+ +Pw Lp+ ++ +++ +f+s +++ +a+ k +nr+ ++ g+Wk+ g+++++ Csa17g001330.1 7 LKFFPSDTTLADHYLRRRIDTDKE---GFIKDIKLYEDHPWLLPHVNNNlFNEKEFFYSVKRTLKAR-KTPNRKvlgrggITVGTWKSNGSKEDI 97 79****************9993...56***********43333244456788777776655.5566644677775579******* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ l+g k+ L +yk + +++ + W+m ey l Csa17g001330.1 98 VDHNNVLIGYKTELSYYK--HGDSTASGWCMTEYWL 131 *************5..555568******87 PP
2	NAM	68.4	1.9e-21	181	311	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWkatgkdk 90 ++F Ptd lv +yL++++ + k +i+++++y+ ePw+Lp+ vk+ e+ w++F++r + +g+++ r+ g+W+++g ++ Csa17g001330.1 181 LKFFPTDLKLVEHYLCNRLITGKD---GFITDIKLYEDEPWRLPH-VKNdqfIERGWFYFVERTCE--SGSKTIRTvpgrggSGGGTWNKSGLKT 269 79**************999984...45***********3.33312356799998765..567777764555556699****** PP NAM 91 evlskkgelvglkktLvfy...kg.rapkgektdWvmheyrl 128 ++l++++ ++g k+ +y +g ++kge t W+m ey l Csa17g001330.1 270 AILDANDVVIGYKQEYSYYkhvRGqPKKKGEPTGWCMTEYWL 311 ***************655343788999*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.627	3	149	IPR003441	NAC domain
Pfam	PF02365	1.4E-12	6	130	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-24	7	149	IPR003441	NAC domain
PROSITE profile	PS51005	30.291	177	328	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-26	178	328	IPR003441	NAC domain
Pfam	PF02365	2.7E-12	180	310	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MADPRDLKFF PSDTTLADHY LRRRIDTDKE GFIKDIKLYE DHPWLLPHVN NNLFNEKEFF 60 YSVKRTLKAR KTPNRKVLGR GGITVGTWKS NGSKEDIVDH NNVLIGYKTE LSYYKHGDST 120 ASGWCMTEYW LASKKNEFQE TVLCYIRGKK KQVKNVSSYA SSDRAFAPRE DMITMVDPSH 180 LKFFPTDLKL VEHYLCNRLI TGKDGFITDI KLYEDEPWRL PHVKNDQFIE RGWFYFVERT 240 CESGSKTIRT VPGRGGSGGG TWNKSGLKTA ILDANDVVIG YKQEYSYYKH VRGQPKKKGE 300 PTGWCMTEYW LGSDENAAEA VLCNIRVKKD VDDQFQLQTT ETNNNIVEHP PLDNNTVSNA 360 LVTGDGGEGY DSETGQQNMD ADDYEFMFDT ELLDFVDQQQ PLMLSQDSIP PLEVQDLRST 420 KDQMEEYAKE LENILDKDED DDDDDMVKQQ QQHPHIPLPL ESVTQQREQE RMIDSTFGFI 480 DQQQPLMLPQ DSIPSLGGQD LRSTMEEYSK ELENILDKDE DDENDRVTQQ QQHPHIPLPL 540 QVQDSGNQLV IITEDECVGR QDILNLDQHM ENYAEELENL LVKDEEEDGV DTASQQQEQE 600 KMVDTLGEMD SARFEMQGNL YFQGSYLEGI QEMSPWDNMT MINTNPFGLL FNTHGYEMQE 660 PPVTNGVNKK SLGCVANCAM QEQRRKRRKQ C*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MADPRDLKFF PSDTTLADHY LRRRIDTDKE GFIKDIKLYE DHPWLLPHVN NNLFNEKEFF  60
YSVKRTLKAR KTPNRKVLGR GGITVGTWKS NGSKEDIVDH NNVLIGYKTE LSYYKHGDST  120
ASGWCMTEYW LASKKNEFQE TVLCYIRGKK KQVKNVSSYA SSDRAFAPRE DMITMVDPSH  180
LKFFPTDLKL VEHYLCNRLI TGKDGFITDI KLYEDEPWRL PHVKNDQFIE RGWFYFVERT  240
CESGSKTIRT VPGRGGSGGG TWNKSGLKTA ILDANDVVIG YKQEYSYYKH VRGQPKKKGE  300
PTGWCMTEYW LGSDENAAEA VLCNIRVKKD VDDQFQLQTT ETNNNIVEHP PLDNNTVSNA  360
LVTGDGGEGY DSETGQQNMD ADDYEFMFDT ELLDFVDQQQ PLMLSQDSIP PLEVQDLRST  420
KDQMEEYAKE LENILDKDED DDDDDMVKQQ QQHPHIPLPL ESVTQQREQE RMIDSTFGFI  480
DQQQPLMLPQ DSIPSLGGQD LRSTMEEYSK ELENILDKDE DDENDRVTQQ QQHPHIPLPL  540
QVQDSGNQLV IITEDECVGR QDILNLDQHM ENYAEELENL LVKDEEEDGV DTASQQQEQE  600
KMVDTLGEMD SARFEMQGNL YFQGSYLEGI QEMSPWDNMT MINTNPFGLL FNTHGYEMQE  660
PPVTNGVNKK SLGCVANCAM QEQRRKRRKQ C*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g001330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010462533.1	0.0	PREDICTED: uncharacterized protein LOC104743115
STRING	XP_010480317.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20214	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03490.1	2e-22	NAC domain containing protein 6