PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g001010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 352aa MW: 39868.4 Da PI: 7.7132

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g001010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.3	1.5e-32	9	138	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 p G+rF+ t+ee+ +yL+ k +++++l +evi++v+i++++Pw+Lp+ v++++ wyfF + ++ky++g+ ++r t+sg+Wk+tgk+ + Csa17g001010.1 9 PIGVRFRLTEEEIF-YYLRVKNLESNTSLvDEVISTVNICSSDPWHLPSmattIVETTDLFWYFFGRIENKYNKGDIQSRRTQSGFWKKTGKTID 102 89********99.999999777775551667***********53444334455599***************************** PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++k + e++g k++L+fy + g+k++Wvmhey++ Csa17g001010.1 103 IKRKsgNCEKIGEKRVLMFY---LKGGSKSKWVMHEYHA 138 99766678********...577889******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-35	5	159	IPR003441	NAC domain
PROSITE profile	PS51005	35.891	8	159	IPR003441	NAC domain
Pfam	PF02365	1.6E-17	9	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MSLSKVAYPI GVRFRLTEEE IFYYLRVKNL ESNTSLVDEV ISTVNICSSD PWHLPSMATT 60 IVETTDLFWY FFGRIENKYN KGDIQSRRTQ SGFWKKTGKT IDIKRKSGNC EKIGEKRVLM 120 FYLKGGSKSK WVMHEYHATF PYSPPNQMMT YTLCKVKFKG EMREIEESRT LYPAPMNNND 180 NNIGGLIIKN PCQITGSPLD LDALDWVMDD ILSPDFVGLA ADDDDEQSKG VYMEEYNRYR 240 PKKPLTGVFS DNSSDSDSIS PTTSSIQTSS TCDSFGSSNQ IITDLLPESP TSPVKETPVK 300 KKKTYDDDAL GTEIGERNKL GQVMMIKNKK AGFFCRMIQK FVKIIQLCSS N*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MSLSKVAYPI GVRFRLTEEE IFYYLRVKNL ESNTSLVDEV ISTVNICSSD PWHLPSMATT  60
IVETTDLFWY FFGRIENKYN KGDIQSRRTQ SGFWKKTGKT IDIKRKSGNC EKIGEKRVLM  120
FYLKGGSKSK WVMHEYHATF PYSPPNQMMT YTLCKVKFKG EMREIEESRT LYPAPMNNND  180
NNIGGLIIKN PCQITGSPLD LDALDWVMDD ILSPDFVGLA ADDDDEQSKG VYMEEYNRYR  240
PKKPLTGVFS DNSSDSDSIS PTTSSIQTSS TCDSFGSSNQ IITDLLPESP TSPVKETPVK  300
KKKTYDDDAL GTEIGERNKL GQVMMIKNKK AGFFCRMIQK FVKIIQLCSS N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-15	3	156	12	162	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-15	3	156	12	162	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-15	3	156	12	162	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-15	3	156	12	162	NO APICAL MERISTEM PROTEIN
3swm_A	8e-15	3	156	15	165	NAC domain-containing protein 19
3swm_B	8e-15	3	156	15	165	NAC domain-containing protein 19
3swm_C	8e-15	3	156	15	165	NAC domain-containing protein 19
3swm_D	8e-15	3	156	15	165	NAC domain-containing protein 19
3swp_A	8e-15	3	156	15	165	NAC domain-containing protein 19
3swp_B	8e-15	3	156	15	165	NAC domain-containing protein 19
3swp_C	8e-15	3	156	15	165	NAC domain-containing protein 19
3swp_D	8e-15	3	156	15	165	NAC domain-containing protein 19
4dul_A	9e-15	3	156	12	162	NAC domain-containing protein 19
4dul_B	9e-15	3	156	12	162	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g001010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010474632.1	0.0	PREDICTED: NAC domain-containing protein 5-like isoform X2
Swissprot	O81914	1e-117	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	R0I7D2	1e-149	R0I7D2_9BRAS; Uncharacterized protein
STRING	XP_010474631.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-100	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]