PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g055680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 263aa    MW: 29588.8 Da    PI: 8.4128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g055680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-1476128155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++++h  +Er+RR+++ s f  Lr+llP       ++K s ++   +Av+YIk+Lq
  Csa16g055680.1  76 KKMKHRDIERQRRQEVSSLFKSLRSLLPFqY---IQGKRSTSDHIFQAVKYIKDLQ 128
                     6899*************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.29E-1672148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.19E-1473132No hitNo description
PROSITE profilePS5088814.58375127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-1276128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1276145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-581133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDLVPSMFML DSTYEDGLLF SDSFLLSSFV SNQNHDVCDP ITNKIGGSKK KRSLCDTYGL  60
SEANKNDDDD DVRESKKMKH RDIERQRRQE VSSLFKSLRS LLPFQYIQGK RSTSDHIFQA  120
VKYIKDLQNK NKELNEKRNR IKKSISGTNT TVPSTEECTS SLSSSTTSTF SLGCSCVGDK  180
HFTVMVTPCL VGVEIIISCC LGRNKSCLSS VLQILAQEQR LGIVSCLSTR LQQRFMHTIV  240
SQVEDSKQIN TLELRDKIVN MM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g055680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935160.0AB493516.1 Arabidopsis thaliana At1g62975 mRNA for hypothetical protein, partial cds, clone: RAAt1g62975.
GenBankAK2280360.0AK228036.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-54-L04.
GenBankBT0064080.0BT006408.1 Arabidopsis thaliana At1g62975 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473522.10.0PREDICTED: transcription factor bHLH125-like
SwissprotQ9LQ081e-137BH125_ARATH; Transcription factor bHLH125
TrEMBLA0A178WJY31e-137A0A178WJY3_ARATH; Uncharacterized protein
STRINGXP_010473522.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.11e-112bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]