PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g052260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 785aa    MW: 89991.2 Da    PI: 7.578
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g052260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.37e-111913011128
             NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                     d+ ++ ++Lk+ + + +  +e + +++d+++ +P+     +  +  e+  f + + ++++ gk      +sg W+  g+dk ++s+ +g+  g k
  Csa16g052260.1  19 DDVIILRFLKRMIVNGDSWAELFTQDADVFNKNPNVE---F--N-AEIpIFLVVKPRTESCGKTDGC--SSGCWRIIGRDKLIKSEeTGKILGFK 105
                     6778999999999998877756689999999999632...2..2.3443788888888777655544..69*************98778889*** PP

             NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                     k+L f  +++p   k +Wvm+eyrl
  Csa16g052260.1 106 KILKFCLKSQPMEYKRSWVMEEYRL 130
                     ***********************98 PP
2NAM33.51.3e-1053458578128
             NAM  78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ksg W+  g+dk ++sk +g++ g kk+L f ++r+p+  k +Wvm+e+rl
  Csa16g052260.1 534 CKSGCWRIMGRDKLIKSKeTGKVLGFKKILKFCTKRKPREYKRSWVMEEFRL 585
                     579*************99788899**************************98 PP
3NAM21.65.8e-0767176438128
             NAM  38 diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy......kgrapkgektdWvmhe 125
                     ++y+++P ++    + +++    F +   +++t   +++  + gyW+    d ++ s  ++e++g kk++ fy        r+ +  k +W+++e
  Csa16g052260.1 671 NVYRLHPLKFV---DLRDQMFLNFGTCIFANQTCGDTEK-CDGGYWRIMHPDVKINSMpSRETIGFKKVFKFYetekqrYIREGEEIKVTWFIDE 761
                     66677776663...2234444445555555555555555.478************99888999**********554432235556679******* PP

             NAM 126 yrl 128
                     yrl
  Csa16g052260.1 762 YRL 764
                     *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.8199148IPR003441NAC domain
PfamPF023651.2E-618130IPR003441NAC domain
SuperFamilySSF1019413.14E-2319147IPR003441NAC domain
SuperFamilySSF1019413.79E-13167279IPR003441NAC domain
PROSITE profilePS510059.658172318IPR003441NAC domain
Gene3DG3DSA:3.50.70.102.7E-52305448IPR016088Chalcone isomerase, 3-layer sandwich
SuperFamilySSF546264.58E-50306471IPR016087Chalcone isomerase
PfamPF024311.6E-58343469IPR016087Chalcone isomerase
PROSITE profilePS5100518.588465604IPR003441NAC domain
PfamPF023656.9E-6509585IPR003441NAC domain
SuperFamilySSF1019414.84E-20516603IPR003441NAC domain
SuperFamilySSF1019416.54E-17627777IPR003441NAC domain
PROSITE profilePS5100514.951633780IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009813Biological Processflavonoid biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0045430Molecular Functionchalcone isomerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MEDESATDYN QIAMLNAEDD VIILRFLKRM IVNGDSWAEL FTQDADVFNK NPNVEFNAEI  60
PIFLVVKPRT ESCGKTDGCS SGCWRIIGRD KLIKSEETGK ILGFKKILKF CLKSQPMEYK  120
RSWVMEEYRL TNNLNRKQDH VICKIRFLFR TEISFLLAKH FSYLSTIPEN LLLPSYGYYS  180
DTQEEDESYL LTISDSDGNV WPSYVTNNNV YRLHPLTLVD PFEQMFRFYG ICIYANETLR  240
TTDECYGAYW KILHSHELIK SKSGKTIGFK RGFEFYQMEK LSYGHEEEDL KLAMSLSNSL  300
LPSLSSVTQL QIDNVTFAPA ISSQASHNPL FLGGAGVRGL DMHGEFEKFI KVTMKRPLTG  360
KEYSMKVAKN CVMIWKSLGI YTQSEAKALQ KFLKIFKDQN FPPGASILFA LSPKGSLTIA  420
FSKDDTIPKA GQAVVENKLL AEAVLESIIG KNGVSPATRL SLAERLAQLM NHNKDDELSN  480
GEDEATYQQI TRELIKAADE LLNAEDDTNP YEDFDSESST FFIVKPQCGK SDGCKSGCWR  540
IMGRDKLIKS KETGKVLGFK KILKFCTKRK PREYKRSWVM EEFRLTNNLN WNQDPLVICK  600
IRFLFEAETS SLLAKHFSYL STTEPVPVPA SLLLPAYGFK SRDPRQDEAE HVLRIPAVCK  660
GKNWPSYVTN NVYRLHPLKF VDLRDQMFLN FGTCIFANQT CGDTEKCDGG YWRIMHPDVK  720
INSMPSRETI GFKKVFKFYE TEKQRYIREG EEIKVTWFID EYRLVEKEMQ NKVLSVISII  780
TTDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4doi_A5e-762944931245Chalcone--flavonone isomerase 1
4doi_B5e-762944931245Chalcone--flavonone isomerase 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g052260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6017511e-133HE601751.1 Arabidopsis halleri subsp. halleri BAC clone 9G1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473217.10.0PREDICTED: uncharacterized protein LOC104752711
TrEMBLR0GIC31e-139R0GIC3_9BRAS; Uncharacterized protein
STRINGXP_010473217.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60350.11e-130NAC domain containing protein 24