PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g051410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 410aa    MW: 46568.2 Da    PI: 8.0302
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g051410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.4e-092532901954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp   ++  LAk++gLt++qV++WF N R +
  Csa16g051410.1 253 FEHflHPYPRDLDKVMLAKQTGLTKSQVSNWFINARVR 290
                     665559******************************87 PP
2BELL110.59.4e-36134204272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     rq l++k+akL+s++e+V++rYkqy++q+qt+issFe+++glgsa+pYt++Al++iS++Fr ++d+i+ qi
  Csa16g051410.1 134 RQVLEMKRAKLISMVEKVEQRYKQYHDQMQTIISSFEQAVGLGSANPYTHMALQTISKKFRVVRDMICLQI 204
                     56799***************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-4872202IPR006563POX domain
PfamPF075263.2E-3583200IPR006563POX domain
PROSITE profilePS5007112.131231294IPR001356Homeobox domain
CDDcd000866.38E-12234295No hitNo description
SMARTSM003891.6E-8234298IPR001356Homeobox domain
SuperFamilySSF466892.57E-17235300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-27237298IPR009057Homeodomain-like
PfamPF059202.7E-17251290IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MASFFHGESN MREPSSDLFM MNLNPFPEPT ITSNAHNHHF YNLCFGSQQH GPRDEVEDHI  60
EQGNSSVSTY SYEGVFRGLT PIYLRAAQEL LNEIVNVGNS SHGAKQVPRM SKESAIYGKG  120
DIVGGHTPSV AAYRQVLEMK RAKLISMVEK VEQRYKQYHD QMQTIISSFE QAVGLGSANP  180
YTHMALQTIS KKFRVVRDMI CLQIKHVNKL LGKKECDEQL KHLGKMAHHH SNAWRPQRVL  240
PENAVSILRS WLFEHFLHPY PRDLDKVMLA KQTGLTKSQV SNWFINARVR VWKPMVEELY  300
LEEMNIEESR KGSNPNEHST NGSSSKQPYN NSTSDESSNS ILPTFYQGFN ENETPMPNAS  360
SSCSIGRFRK QHMNQANFIH FNGGFENYHT MVGNGVSLSL GLPHSCDQTX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16239298463Homeobox protein Meis2
3k2a_B2e-16239298463Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g051410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473114.10.0PREDICTED: BEL1-like homeodomain protein 5, partial
SwissprotQ8S8970.0BLH5_ARATH; BEL1-like homeodomain protein 5
TrEMBLR0FW020.0R0FW02_9BRAS; Uncharacterized protein
STRINGXP_010473114.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.10.0BEL1-like homeodomain 5