PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g050800.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

YABBY

Protein Properties

Length: 165aa MW: 18452.1 Da PI: 9.8588

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g050800.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	186.3	1.6e-57	5	153	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCG+Ct+l svn+a a q l+ + + +++++ ++ ++++ +t+++s Csa16g050800.1 5 MMATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGYCTNLWSVNMAAALQSLSRPNF-------------QATNNAVPEYGSSSRG-HTKIPS 85 6789***************************************99988887776653.............3334444444333333.333333 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++s+ ++ e v+r ekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Csa16g050800.1 86 -RISTRTKTEQ---RIVNRSTEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 153 .2333333333...3589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-67	7	153	IPR006780	YABBY protein
SuperFamily	SSF47095	5.24E-8	90	146	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	107	145	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MANSMMATEQ LCYIPCNFCN IVLAVSVPCS SLFDIVTVRC GYCTNLWSVN MAAALQSLSR 60 PNFQATNNAV PEYGSSSRGH TKIPSRISTR TKTEQRIVNR STEKRQRVPS AYNQFIKEEI 120 QRIKANNPDI SHREAFSTAA KNWAHFPHIH FGLMLESNKQ AKLA*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g050800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119091	0.0	AK119091.1 Arabidopsis thaliana At2g26580 mRNA for unknown protein, complete cds, clone: RAFL21-44-F19.
GenBank	BT003734	0.0	BT003734.1 Arabidopsis thaliana At2g26580 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010473042.1	1e-121	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	1e-114	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A178VPK4	1e-111	A0A178VPK4_ARATH; YAB5
STRING	XP_010473042.1	1e-120	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-116	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]