PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g041380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 314aa    MW: 34959.6 Da    PI: 6.6561
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g041380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.3e-194495156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ ++g+
  Csa16g041380.1 44 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDAAALTIKGH 95
                    79*****998.**********843...6***********************99886 PP
2AP260.53.9e-19112162155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ ++g
  Csa16g041380.1 112 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDAAALTIKG 162
                     79*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.68E-174480No hitNo description
PfamPF008473.3E-134495IPR001471AP2/ERF domain
PROSITE profilePS5103220.62645105IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-184596IPR016177DNA-binding domain
SMARTSM003808.3E-2945111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-274696IPR001471AP2/ERF domain
PRINTSPR003673.6E-104657IPR001471AP2/ERF domain
PRINTSPR003673.6E-106884IPR001471AP2/ERF domain
CDDcd000181.10E-21112172No hitNo description
PfamPF008477.7E-13112162IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21113171IPR016177DNA-binding domain
PROSITE profilePS5103223.143113170IPR001471AP2/ERF domain
SMARTSM003802.8E-36113176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-31114171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTESSITSVK LSSPVQEEED DHHHHLHQED SHRTSNKKRV RPDPGYRGVR MRTWGKWVSE  60
IREPRKKSRI WLGTFSTPEM AARAHDAAAL TIKGHQEDSH RTNNKKRVRP DPGYRGVRMR  120
TWGKWVSEIR EPRKKSRIWL GTFSTPEMAA RAHDAAALTI KGTSAVLNFP ELATYLPRPA  180
SSSPRDVQAA AAVAAAMDFS SSSAPVVSDP TTIVVPETHL SSSSYSTSTS SSLSPSSEEA  240
ASTAEELSEI VELPSLETSY DESWNEFVYV DSAYPPSSPW YFNNCYSFYY HSDENGISMG  300
EPFESSNFGP LFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-171141701572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g041380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042600.0AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence.
GenBankAY5608750.0AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471905.11e-130PREDICTED: ethylene-responsive transcription factor ERF037
SwissprotO806541e-107ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLD7KUG71e-112D7KUG7_ARALL; Uncharacterized protein
STRINGXP_010471905.11e-130(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.17e-94ERF family protein