PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g039140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 308aa    MW: 33762.6 Da    PI: 8.5801
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g039140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.94.4e-3270125258
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     ++vrY+eClkNhAa++Gg + DGCgEfmps geegt++al+CaAC+CHRnFHR+e +
  Csa16g039140.1  70 STVRYRECLKNHAATVGGSVHDGCGEFMPS-GEEGTIEALRCAACDCHRNFHRKEID 125
                     689**************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2671125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-2972124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.4E-3073124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.08374123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.9E-31230300IPR009057Homeodomain-like
SuperFamilySSF466897.05E-20232300IPR009057Homeodomain-like
PROSITE profilePS500718.568237301IPR001356Homeobox domain
TIGRFAMsTIGR015651.3E-29239296IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDMRSHEMIE RRRDDNGNNG GVISNIITTN DDNCNGNNNN TRVSCNSQTL DHHQSKSPSS  60
FSISAAVKSS TVRYRECLKN HAATVGGSVH DGCGEFMPSG EEGTIEALRC AACDCHRNFH  120
RKEIDGVGSS DLIPHHRHHH HHHHNQYGGG GGGRRPPPQN MMLNPLMLPP PPNYQPIHHH  180
KYGMSPPGGG GMVTPMSVAY GGGGGAESSS EDLNLYGQSS GEGAGAAAGQ MAYSMSSSKK  240
RFRTKFTTEQ KERMMEFAEK LGWRMNKQDE EELKRFCGEI GVKRQVFKVW MHNNKNNAKK  300
PPTPTTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-232382981676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g039140.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0258140.0AC025814.7 Arabidopsis thaliana chromosome 1 BAC F22H5 genomic sequence, complete sequence.
GenBankAK2290380.0AK229038.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-33-K14.
GenBankAY0844620.0AY084462.1 Arabidopsis thaliana clone 10873 mRNA, complete sequence.
GenBankBT0288940.0BT028894.1 Arabidopsis thaliana unknown protein (At1g75240) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471631.10.0PREDICTED: zinc-finger homeodomain protein 5-like
SwissprotQ9FRL51e-139ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLR0IFI11e-162R0IFI1_9BRAS; Uncharacterized protein
STRINGXP_010471631.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72792543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.13e-93homeobox protein 33