PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g038430.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 296aa MW: 33618.9 Da PI: 7.6196

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g038430.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81	1.2e-25	133	183	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s+e++s+yF++pi++AA eL+v+lT+LKr+CR++GI+RWPhRk+ sl Csa16g038430.1 133 SKALSMETVSRYFYMPITQAAIELNVGLTLLKRRCRELGIRRWPHRKLMSL 183 689*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.063	104	205	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-20	136	183	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MADHKNKEDK PFSFLTHSPS FDHSSLSYPL FDWEEDLLAL HESSASQSFP LTTTSLPLPD 60 LEPLSEDVLN SYSSGSWNGT EHNRGYGASS EKKTKHGAVQ ETTKKRKLNE RRRENSVRII 120 SDITTTYTTC PASKALSMET VSRYFYMPIT QAAIELNVGL TLLKRRCREL GIRRWPHRKL 180 MSLKTLISNV KELQKMEGEE NAGKLQNALE MLEKEKRTIE ELPDLEFEDK TKRLRQACFK 240 ANHKRKKKRS HKSDQAHIAS CLSSGSVASD ESVNDAVMEE SDEEVKYLLC GFSNE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	250	KKRSH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g038430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019093346.1	0.0	PREDICTED: protein RKD2-like
Swissprot	Q9CA66	1e-163	RKD2_ARATH; Protein RKD2
TrEMBL	R0GEJ6	1e-176	R0GEJ6_9BRAS; Uncharacterized protein
STRING	XP_010428433.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	1e-136	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]