PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g028670.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 451aa MW: 50553.6 Da PI: 6.1195

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g028670.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	164	205	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNk 43 + rr+++NReAAr+sR+RKka++++Le+ + ++Le+e + Csa16g028670.2 164 RTLRRLAQNREAARKSRLRKKAYVQQLENsrvRLAQLEEELE 205 5679***********************984445566666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-8	155	210	No hit	No description
SMART	SM00338	2.2E-5	160	220	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.266	162	206	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-7	163	205	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.54E-7	164	209	No hit	No description
PROSITE pattern	PS00036	0	167	182	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.9E-28	249	322	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MQSSFKTVPF NPDFYSQSSY FFRGDTCLEE FHQPVNGFHH DEAIDLSPNV TIASSANLHY 60 TTFDTGMDCG GLRERLEVED ECLDTGQLVY QKGTRLVGGG GGEVNGSLEN WCDSVSAMAD 120 NSQHTDTSTD IDTDDKTQLN GGHQGMVLAT NCSDQSKVKS SEQRTLRRLA QNREAARKSR 180 LRKKAYVQQL ENSRVRLAQL EEELERVRQQ GSVVESGVTA NHTHLPAGNG VFSFELEYTR 240 WKEEHQRLIN DLRSGVNSQL GDNELRMLVD AVMSHYNEIF RLKGIGTKVD VFHMLSGMWK 300 TPAERFFMWL GGFRSSELLK ILGNHVDPLT DQQLIGICNL QQSSQQTEDA LSQGMEALQQ 360 SLLETLSSAS MGPNSSANVA DYMGHMAMPM GKLGTLENFL RQADLLRQQT LQQLHRILTT 420 RQAARAFLVI HDYISRLRAL SSLWLARPRD *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MQSSFKTVPF NPDFYSQSSY FFRGDTCLEE FHQPVNGFHH DEAIDLSPNV TIASSANLHY  60
TTFDTGMDCG GLRERLEVED ECLDTGQLVY QKGTRLVGGG GGEVNGSLEN WCDSVSAMAD  120
NSQHTDTSTD IDTDDKTQLN GGHQGMVLAT NCSDQSKVKS SEQRTLRRLA QNREAARKSR  180
LRKKAYVQQL ENSRVRLAQL EEELERVRQQ GSVVESGVTA NHTHLPAGNG VFSFELEYTR  240
WKEEHQRLIN DLRSGVNSQL GDNELRMLVD AVMSHYNEIF RLKGIGTKVD VFHMLSGMWK  300
TPAERFFMWL GGFRSSELLK ILGNHVDPLT DQQLIGICNL QQSSQQTEDA LSQGMEALQQ  360
SLLETLSSAS MGPNSSANVA DYMGHMAMPM GKLGTLENFL RQADLLRQQT LQQLHRILTT  420
RQAARAFLVI HDYISRLRAL SSLWLARPRD *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g028670.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118286	0.0	AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBank	BT008586	0.0	BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470818.1	0.0	PREDICTED: transcription factor PERIANTHIA isoform X1
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	R0I710	0.0	R0I710_9BRAS; Uncharacterized protein
STRING	XP_010470818.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	0.0	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]