PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g028290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 283aa    MW: 32507.8 Da    PI: 5.096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g028290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.2e-05157177626
                     HHHHHHHHHHHHHHHHHHHCT CS
             HLH   6 nerErrRRdriNsafeeLrel 26 
                     n  E+rRR +iN ++ +L+el
  Csa16g028290.1 157 NLTEKRRRTDINAKIKTLKEL 177
                     899****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.99E-4146177No hitNo description
SuperFamilySSF474591.89E-6150208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.763151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-6154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MNFNYYHQGS NEFWSSFSQS FAVPDPRDEF YPGIISPITA MPISMDVDVP AEPWKVLEDG  60
DKDVGLWNNA AAEVDAYKND ELLEAIIAWK PMEEGKEKEK EKEKEKEKEK EKEKEKEKEK  120
GKGKEKEKGK GKEKEDVAVE KTMTLSKRRR GNTEGRNLTE KRRRTDINAK IKTLKELTRC  180
TEKKDLVSSL DCIISNITEM KQYVEGFYYP PPMVPPTGMG MDYRPGPWMY PYNYVHPQYM  240
MPYNYNPYVY GQATGYGNEM VPAAAVPTNQ GVNYEPETAN PM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147163RRRGNTEGRNLTEKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g028290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415444.21e-123PREDICTED: uncharacterized protein LOC104701444
STRINGXP_010415444.11e-60(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.12e-07bHLH family protein