PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g028030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

BBR-BPC

Protein Properties

Length: 275aa MW: 31256.8 Da PI: 10.3113

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g028030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	38.3	4.5e-12	2	131	1	125
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki.....rernlalsekkaav...........aerd........maflqrdkalaern 71 md+dg +rn+gyyep+ +++ nlg+ql+ ++r++k+ +++n+++++++ + +rd m++ ++l++ Csa16g028030.1 2 MDEDGLSNRNWGYYEPS-QFRPNLGFQLI---PDRNEKPfvvspQNQNQNFITPSVLYrgggsssslmsFPRDytasdapfMSY----SWLNK-- 86 9*************9.*****96...6888888888999999999999988866655555544344455555555555....66666.. PP GAGA_bind 72 kalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave 125 +rd+k++++++++ s ++++ +++t+ + + ql +p++ed++ + Csa16g028030.1 87 ----HRDSKFFSNVPNNPS-NHHN----LLVRETSRMTQPMQLLQPEVEDESLK 131 ....*********6665.4444....45566666655555577788877766 PP
2	GAGA_bind	269.9	1.3e-82	131	274	151	301
GAGA_bind 151 kkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244 k +++++ ++k k+ek+ k++++ +++ ers +ksi++v+ngvs+D++ lPvPvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPL Csa16g028030.1 131 K--------RKHQRGAPKAKKEKKLKDNNMLRVQrERSPLFRKSIEMVINGVSMDIGCLPVPVCSCTGMPQQCYRWGCGGWQSACCTTNVSMYPL 217 2........222222444444444555555555558999****************************************************** PP GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 P+s+krrgaRiagrKmSqgaf+k+LekL+a+G+d+s p+DLk+hWAkHGtnkfvtir Csa16g028030.1 218 PISAKRRGARIAGRKMSQGAFRKVLEKLSADGFDFSIPIDLKSHWAKHGTNKFVTIR 274 ******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	5.4E-81	2	274	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	2.9E-136	2	274	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MMDEDGLSNR NWGYYEPSQF RPNLGFQLIP DRNEKPFVVS PQNQNQNFIT PSVLYRGGGS 60 SSSLMSFPRD YTASDAPFMS YSWLNKHRDS KFFSNVPNNP SNHHNLLVRE TSRMTQPMQL 120 LQPEVEDESL KRKHQRGAPK AKKEKKLKDN NMLRVQRERS PLFRKSIEMV INGVSMDIGC 180 LPVPVCSCTG MPQQCYRWGC GGWQSACCTT NVSMYPLPIS AKRRGARIAG RKMSQGAFRK 240 VLEKLSADGF DFSIPIDLKS HWAKHGTNKF VTIR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g028030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC012563	1e-133	AC012563.7 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete sequence.
GenBank	AY380569	1e-133	AY380569.1 Arabidopsis thaliana basic pentacysteine 3 (BPC3) mRNA, complete cds.
GenBank	BT022117	1e-133	BT022117.1 Arabidopsis thaliana At1g68120 mRNA, complete cds.
GenBank	CP002684	1e-133	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470741.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE3-like isoform X1
Refseq	XP_010470742.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE3-like isoform X2
Swissprot	Q9C9X6	1e-152	BPC3_ARATH; Protein BASIC PENTACYSTEINE3
TrEMBL	R0GFA2	1e-167	R0GFA2_9BRAS; Uncharacterized protein
STRING	XP_010470741.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15347	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68120.1	1e-138	basic pentacysteine 3