PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g023950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 297aa MW: 31956 Da PI: 6.6823 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 6e-10 | 208 | 249 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq Csa16g023950.1 208 AKNRRERISERLKILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 249 69******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.06E-12 | 198 | 253 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-12 | 199 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.32 | 199 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-13 | 199 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-12 | 205 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-7 | 208 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MALVNDHPNE TNYMSKQNSS SSEDLSSPGL DQPDTAYAGG GGGGSASSSS TMNSDHQQHQ 60 GFVFYPSGEE HHNSLMDFNG SSFLNFDHHE SFPPPAISCG GSSGGSGFSF LEGNNMSYGF 120 TNWNQNHMDI ISPRSTETPQ GQKDWLYSDS TVVTTGSRHE SMSPKSAGNK RSHTGESTQP 180 SKKPNNGGNG KAKPKPTSSP KDPQSLAAKN RRERISERLK ILQELVPNGT KVDLVTMLEK 240 AISYVKFLQV QVKVLATDEF WPAQGGKAPD ISQVKDAIDA ILSSSQRDRT SNLITN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g023950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY128310 | 0.0 | AY128310.1 Arabidopsis thaliana unknown protein (At1g66470) mRNA, complete cds. | |||
GenBank | BT006320 | 0.0 | BT006320.1 Arabidopsis thaliana At1g66470 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470523.1 | 0.0 | PREDICTED: transcription factor bHLH83 | ||||
Swissprot | Q9C707 | 1e-179 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | D7KTQ8 | 0.0 | D7KTQ8_ARALL; Basic helix-loop-helix family protein | ||||
STRING | XP_010470523.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4260 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 1e-165 | ROOT HAIR DEFECTIVE6 |