PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g023390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19214 Da PI: 5.3886 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.3 | 7.2e-12 | 2 | 50 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien r++tf k ++ i K +ELS LC+a+v +++s++g y++ Csa16g023390.1 2 KKIENCADRTITFYKCKQKIYNKLSELSLLCGANVGFLVYSNSGIPYTF 50 68******************************************99999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.27E-15 | 1 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.442 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.8E-7 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-14 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MKKIENCADR TITFYKCKQK IYNKLSELSL LCGANVGFLV YSNSGIPYTF GSSSFEVISK 60 RFLNSEGSSS TSLPQQSNID VHHKEKMEEL CQVYNNLIEK VDVEKQKGMT MAKAEAEALP 120 VEKDVWWKVD PMTIKDKEVI KQLLEKYEDL YEKLCDEVGA RNQIENAP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g023390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010474126.1 | 1e-122 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | D7LMQ2 | 9e-55 | D7LMQ2_ARALL; Uncharacterized protein | ||||
STRING | XP_010474126.1 | 1e-122 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4676 | 13 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29962.1 | 3e-46 | AGAMOUS-like 64 |