PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g016650.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 239aa MW: 26010.4 Da PI: 4.741

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g016650.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.8	7.5e-43	57	156	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la Csa16g016650.1 57 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLA 151 7********************************************************************************************** PP DUF260 96 llkee 100 +++ e Csa16g016650.1 152 KTQVE 156 99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.323	56	157	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-42	57	154	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MLKMEINGGV ATPTASAVAV AAVAETTTPV SSPSPTSSPP PPPSPQQPPQ PPVILSPCAA 60 CKILRRRCAE KCVLAPYFPP TDPAKFTIAH RVFGASNIIK FLQELPESQR TDAVNSMVYE 120 AGARMRDPVY GCAGAIYHLQ RQVSELQAQL AKTQVELVGM QLQRSSLLEL IYKMEQTKLS 180 AQEQGQHNMS FESSFESGDE FISSPDEVSN DLGFLEDNNN NNIVNNNSSM SWWDPLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-40	49	158	3	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-40	49	158	3	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g016650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473840	0.0	AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470075.1	1e-178	PREDICTED: LOB domain-containing protein 11-like
Swissprot	Q9SK08	1e-138	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A291LQZ0	1e-134	A0A291LQZ0_BRARR; Transcription factor LBD11
TrEMBL	A0A397ZLR9	1e-134	A0A397ZLR9_BRACM; Uncharacterized protein
STRING	XP_010470075.1	1e-177	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-110	LOB domain-containing protein 11