PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g016570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 451aa    MW: 49775.9 Da    PI: 6.9451
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g016570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17133182155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Csa16g016570.1 133 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 182
                     78*******************......55************************997 PP
2AP240.75.8e-13225274154
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ + +
  Csa16g016570.1 225 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAINTN 274
                     89********.7******5553..2.26**********99*********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-9133182IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-15133190IPR016177DNA-binding domain
PROSITE profilePS5103217.82134190IPR001471AP2/ERF domain
SMARTSM003801.2E-32134196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-17134190IPR001471AP2/ERF domain
CDDcd000188.94E-11134189No hitNo description
SuperFamilySSF541711.9E-16225285IPR016177DNA-binding domain
CDDcd000184.60E-23225285No hitNo description
PfamPF008473.1E-8225272IPR001471AP2/ERF domain
PROSITE profilePS5103215.277226283IPR001471AP2/ERF domain
SMARTSM003801.6E-29226289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15226284IPR001471AP2/ERF domain
PRINTSPR003678.1E-6227238IPR001471AP2/ERF domain
PRINTSPR003678.1E-6265285IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MLDLNLDADS PDSTQYGDSY LDRQTSDGSG GNRLEESGTS TSSVINADGD EDSCSNTRAF  60
TLSFDILKVG TGGDETPVAG VTTKEFFRSW IDLSFDGETK LAAPSPVPVP VPTPAPVPAQ  120
VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF  180
RGVDADINFT LGDYEEDMKQ VQNLSKEEFV HILRRQSTGF SRGSSKYRGV TLHKCGRWEA  240
RMGQFLGKKY IYLGLFDSEV EAARAYDKAA INTNGREAVT NFDMSSYQNE INSQANNEGG  300
HEKLDLNLGM SLSPGNAPKQ NGRLFHFPSN TYETQRGVSL RMDNEFMGKP VNTPIPYGSS  360
DHRVYWNGAC PSYNNPVEGR ATEKRCEAEG MMSNWGWQRP GQTSTVQQQP PGPQPPPPLF  420
SVAAASSGFS HFRPQPPNDN ATRGYFYPQP *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g016570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0031000.0AF003100.1 Arabidopsis thaliana AP2 domain containing protein RAP2.7 mRNA, partial cds.
GenBankAF3250740.0AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
GenBankAY0508150.0AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
GenBankAY0914180.0AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510603.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLR0HUN30.0R0HUN3_9BRAS; Uncharacterized protein
STRINGXP_010510603.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.30.0related to AP2.7