PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g016480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 346aa MW: 40204.4 Da PI: 9.8791 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.4 | 1.4e-19 | 6 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a ++++++++l +++ ++V++WFqN++a++++ Csa16g016480.1 6 STRWCPTPEQLMILEEMYRSgIRTPNAVQIQQITAHLafygRIEGKNVFYWFQNHKARDRQ 66 58*****************99*************************************996 PP | |||||||
2 | Homeobox | 28.5 | 2.6e-09 | 142 | 173 | 30 | 57 |
HHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 30 reeLAkkl....gLterqVkvWFqNrRakekk 57 +++++++l +++ ++V++WFqN++a++++ Csa16g016480.1 142 IQQITAHLafygRIEGKNVFYWFQNHKARDRQ 173 789999999999*****************996 PP | |||||||
3 | Wus_type_Homeobox | 119.3 | 1.6e-38 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a+tRW+PtpeQ++iLee+y+sG+rtPn+ +iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk Csa16g016480.1 5 ASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67 589***********************************************************9 PP | |||||||
4 | Wus_type_Homeobox | 62 | 1.3e-20 | 141 | 174 | 31 | 64 |
Wus_type_Homeobox 31 eiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk Csa16g016480.1 141 PIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 174 59*******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0013 | 4 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.99E-4 | 7 | 67 | No hit | No description |
Pfam | PF00046 | 2.8E-17 | 7 | 66 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-10 | 7 | 66 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-7 | 8 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.766 | 12 | 67 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.8E-7 | 142 | 173 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH 60 KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISPMIM SQPDNNSNII DHHIPYHHHR 120 PYDHMSFTCC SHASPMFLPH PIQQITAHLA FYGRIEGKNV FYWFQNHKAR DRQKLRKKLA 180 KQLHQQQHQL QLQLQQIKPK PISPMIMSQP DNNSNIIDHH IPYHHHRPYD HMSFTCCSHA 240 SPMFLPHPEN GGEAQNKVMN EYYCTKSGAE EMLMHKPITG PNSSYGRDWM MMMDMGPRPS 300 YPSSSSSTSP IPCCNMMMSS AKIPLKTLEL FPISSINSKQ DSTKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g016480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB058920 | 1e-134 | AB058920.1 Arabidopsis thaliana PRS mRNA for PRESSED FLOWER, complete cds. | |||
GenBank | AC007171 | 1e-134 | AC007171.5 Arabidopsis thaliana chromosome 2 clone T8O18 map mi54, complete sequence. | |||
GenBank | AY251397 | 1e-134 | AY251397.1 Arabidopsis thaliana PRS/WOX3 protein mRNA, complete cds. | |||
GenBank | CP002685 | 1e-134 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | DQ446575 | 1e-134 | DQ446575.1 Arabidopsis thaliana clone pENTR221-At2g28610 homeobox-leucine zipper transcription factor (At2g28610) mRNA, complete cds. | |||
GenBank | DQ653028 | 1e-134 | DQ653028.1 Arabidopsis thaliana clone 0000017226_0000012059 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470062.1 | 1e-122 | PREDICTED: WUSCHEL-related homeobox 3-like | ||||
Swissprot | Q9SIB4 | 6e-89 | WOX3_ARATH; WUSCHEL-related homeobox 3 | ||||
TrEMBL | R0FZL5 | 2e-89 | R0FZL5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010470062.1 | 1e-122 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7480 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 8e-76 | WOX family protein |
Publications ? help Back to Top | |||
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