PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g014550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 275aa    MW: 29843.4 Da    PI: 8.3672
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g014550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.33e-3954152199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdP+yG++g i++lq+++++l++el 
  Csa16g014550.1  54 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQTELT 148
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  Csa16g014550.1 149 TVRT 152
                     9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.04853154IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-4054151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSRDREEFGE YYEIVKKIKK DPTYATTTDH HAVMGIRRHV AAVPPGTTLN TVTPCAACKL  60
LRRRCAEECP FSPYFSPHEP HKFAAVHKVF GASNVSKMLL EVGESQRGDA ANSLVYEANL  120
RLRDPIYGCM GAISALQHHI QSLQTELTTV RTDILRYKYR EATTINSLQN NNNNNFNNNT  180
TTSSVSCDHH ALASAILLSP PPPPPPPPRP PRLLSSQPAP PPTPPGSLPS PSMVVSSSSS  240
SNSSATNSMY NPPPSSAAGY SNSLSSDNNV HYFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-41471654122LOB family transfactor Ramosa2.1
5ly0_B4e-41471654122LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g014550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738430.0AB473843.1 Arabidopsis thaliana ASL10 mRNA for ASYMMETRIC LEAVES2-like 10 protein, complete cds.
GenBankAF4478880.0AF447888.1 Arabidopsis thaliana LOB DOMAIN 13 (LBD13) mRNA, complete cds.
GenBankBT0260520.0BT026052.1 Arabidopsis thaliana At2g30340 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469868.10.0PREDICTED: LOB domain-containing protein 13-like isoform X1
SwissprotQ9AT611e-134LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A178VTE11e-132A0A178VTE1_ARATH; LBD13
STRINGXP_010469868.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19272781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.11e-107LOB domain-containing protein 13
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]