PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g012400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 471aa    MW: 53296.6 Da    PI: 5.7827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g012400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10267309754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er RR +  ++f+ L++l+P++     +K + a+i+ +A++YIk+L
  Csa16g012400.1 267 PTERERRVHFHDRFQDLKSLIPNP-----TKSDRASIVGEAIDYIKEL 309
                     57**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.27E-10255314No hitNo description
SuperFamilySSF474595.56E-13257322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12257320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.691260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-8266309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-8266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEEEKGNLYE EMGCFDPNTP AEVTVETSFS QPEQPPPPPQ QQQPPQILVA GSTSNSNCSV  60
EVEELSEFHL SPQDCPQPAS TPLQFHINPP PPPCDQFHNN MIHQMATHHQ QQQSDWDQNN  120
GYQDFVNMVP NSATTPDLLS LLHLPRCSLP PPPLHHHPSS MLPNSFSDIM SSSSAAAVMY  180
DPLFHLNFPM QPRDQNHLRN GSSSCLLGVE DQIQMDANGG VNMMYFEGGH NNNDNNGDGF  240
DNGVLEFNTT GVVTRKRRRS KKSNTSPTER ERRVHFHDRF QDLKSLIPNP TKSDRASIVG  300
EAIDYIKELL RTIEEFKMLV EKKRFGRFRS KKKARRGEDQ HEEEEDTVNY KPQSEVDQSC  360
FNKNNNSLRC SWLKRKSKVT EVDVRIIDDE VTIKLVQKKK INCLLFTTKV LDQLQLDLHH  420
VAGGQIGEHY SFLFNTKICE GSCVYASGIA DTVMEVVEKQ YMEAVPSNGY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254258RKRRR
2254259RKRRRS
3254261RKRRRSKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g012400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469745.10.0PREDICTED: transcription factor bHLH10-like isoform X1
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLR0HNY70.0R0HNY7_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010469745.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]