PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g012390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 162aa    MW: 18683.5 Da    PI: 4.2904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g012390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1788136354
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  Csa16g012390.1  88 YRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATK 136
                     9*******.**********44465..*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-1287134IPR001471AP2/ERF domain
PROSITE profilePS5103221.73387145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2987146IPR001471AP2/ERF domain
SMARTSM003802.2E-3587151IPR001471AP2/ERF domain
PRINTSPR003672.2E-108899IPR001471AP2/ERF domain
CDDcd000181.13E-2788146No hitNo description
SuperFamilySSF541718.5E-2288147IPR016177DNA-binding domain
PRINTSPR003672.2E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEYSQSPMYS SPSSWSSSQE SLLWNESCFF DQSSDPQSFL CPNYHDYSDD FFSFESSEMM  60
VKEEIQNSEI SNSEEEEKVG IDEEERSYRG VRKRPWGKFA AEIRDSTRNG IRVWLGTFDK  120
AEEAALAYDQ AAFATKGSLA TLNFPVEVVR ESLKKMENRR W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2786148466ATERF1
3gcc_A2e-2786148466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g012390.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065931e-157AC006593.5 Arabidopsis thaliana chromosome 2 clone F16D14 map nga361, complete sequence.
GenBankAY0704431e-157AY070443.1 Arabidopsis thaliana putative ethylene reponse factor AP2 domain transcription factor (At2g31230) mRNA, complete cds.
GenBankAY0965631e-157AY096563.1 Arabidopsis thaliana putative ethylene reponse factor AP2 domain transcription factor (At2g31230) mRNA, complete cds.
GenBankCP0026851e-157CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469744.11e-114PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8VYM01e-87ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A178VV983e-85A0A178VV98_ARATH; ERF15
STRINGXP_010469744.11e-113(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-47ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]