PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g007760.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 221aa MW: 25310.5 Da PI: 9.1805

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g007760.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163	1.1e-50	15	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+d++k++PwdLp ++e yfFs+++ ky++g+r+nr+t sgyWkatg dk++ + Csa16g007760.1 15 LPPGFRFHPTDEELVVQYLRRKVTGLPLPA-SVIPETDVCKSDPWDLPGD---CDSERYFFSTKEAKYPNGNRSNRSTGSGYWKATGIDKQIGK- 104 79**************************.99***********44...47899******************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ +vg+kktLvfykg+ p+g++t+Wv+heyrl Csa16g007760.1 105 KTLAVGMKKTLVFYKGKPPNGTRTNWVLHEYRL 137 8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-61	10	160	IPR003441	NAC domain
PROSITE profile	PS51005	56.596	15	160	IPR003441	NAC domain
Pfam	PF02365	3.0E-27	16	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MEKRSTIKNR GVLRLPPGFR FHPTDEELVV QYLRRKVTGL PLPASVIPET DVCKSDPWDL 60 PGDCDSERYF FSTKEAKYPN GNRSNRSTGS GYWKATGIDK QIGKKTLAVG MKKTLVFYKG 120 KPPNGTRTNW VLHEYRLVDS QQESSHVQSM NWVLCRVFLK KRSNSNKRKE EERDDLENEK 180 ETEKERSSSS VCSSALTQTS SNDSYHEEIS CQENKFCLFL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	13	167	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	13	167	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	13	167	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	13	167	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	13	167	18	174	NAC domain-containing protein 19
3swm_B	2e-55	13	167	18	174	NAC domain-containing protein 19
3swm_C	2e-55	13	167	18	174	NAC domain-containing protein 19
3swm_D	2e-55	13	167	18	174	NAC domain-containing protein 19
3swp_A	2e-55	13	167	18	174	NAC domain-containing protein 19
3swp_B	2e-55	13	167	18	174	NAC domain-containing protein 19
3swp_C	2e-55	13	167	18	174	NAC domain-containing protein 19
3swp_D	2e-55	13	167	18	174	NAC domain-containing protein 19
4dul_A	1e-55	13	167	15	171	NAC domain-containing protein 19
4dul_B	1e-55	13	167	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g007760.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF325080	0.0	AF325080.1 Arabidopsis thaliana putative NAM (no apical meristem)-like protein (At2g33480) mRNA, complete cds.
GenBank	AF410299	0.0	AF410299.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds.
GenBank	AY093730	0.0	AY093730.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010469465.1	1e-140	PREDICTED: NAC domain-containing protein 41-like
Swissprot	Q9FY93	2e-80	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	R0HQU6	1e-113	R0HQU6_9BRAS; Uncharacterized protein
STRING	XP_010469465.1	1e-139	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	1e-114	NAC domain containing protein 41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]