PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g007280.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C3H

Protein Properties

Length: 905aa MW: 98283.9 Da PI: 7.5996

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g007280.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.9e-06	113	133	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC+ffa+ G+C G +CkF H+ Csa16g007280.1 113 LCKFFAK-GWCFNGVSCKFLHV 133 8****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0081	108	134	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-6	108	132	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.7E-4	113	134	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.004	113	135	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence Send to blast
MSDSDMDIDD DEVEQKVQVH TIGGESQLLH KPIQAPNPQN GNSFVHSNSS HVDVKRHSVT 60 TPSNEQANII KEQAFAQDNG TLSRFPAPGI TPNSFFPAAG EGNEPEQKRA AHLCKFFAKG 120 WCFNGVSCKF LHVKENSNCT SQQQPENNMA GSSYIQSDVA RRISDSNEGV RVSQLIGNGV 180 TPLHTREDLS FVNPPGSQRV FSSMSFVNPP GSQRVFPFNN EMRFMPSSEN TGRESLKQTC 240 GAPFTDNRSL VINNSNAFTL RSSFVHEHRS PISSYLKPDM GSSRPAWTGS LSSSVASVPM 300 NEGASTVGNF EKGNNICGSR SLPTLQESQA AVSSEKGAAS NTTSSKKKGS SDDWEPSEPF 360 KASFTIPPYI LPSSDALYNP FTDIENLGDR SRNASLSSKG EQARKNSRQQ KDGDSGSGTQ 420 ARECKNDDKS SSCSQNQHQE SVARRSLEPH GVVEGVATSV VDQNDTTTPS KEISSAXRQQ 480 RREDLSFVNP PGSQRVFSSM SFVNPPGSQR VFPFNNEMRF MPSSENTGRE SLKQTCGAPF 540 TDNRSLVINN SNAFTLRSSF VHEHRSPISS YLKPDMGSSR PAWTGSLSSS VASVPMNEGA 600 STVGNFEKGN NICGSRSLPT LQESQAAVSS EKGAASNTTS SKKKGSSDDW EPSEPFKASF 660 TIPPYILPSS DALYNPFTDI ENLGDRSRNA SLSSKGEQAR KNSRQQKDGD SGSGTQAREC 720 KNDDKSSSCS QNQHQESVAR RSLEPHGVVE GVATSVVDQN DTTTPSKEIS SAAAAENRVV 780 LKRSKPAGHD AWHRSDGSSY KKTLKSDEID GEVRSDAEIK VMRQFRTAVV ETVKEMLKPL 840 WREGRLTKDV HNMIVKKAAE KVVSAAVQFH QVPTDTGSVD QYLGLSATKI VKLVEGYVEK 900 YGKP*

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence Send to blast

MSDSDMDIDD DEVEQKVQVH TIGGESQLLH KPIQAPNPQN GNSFVHSNSS HVDVKRHSVT  60
TPSNEQANII KEQAFAQDNG TLSRFPAPGI TPNSFFPAAG EGNEPEQKRA AHLCKFFAKG  120
WCFNGVSCKF LHVKENSNCT SQQQPENNMA GSSYIQSDVA RRISDSNEGV RVSQLIGNGV  180
TPLHTREDLS FVNPPGSQRV FSSMSFVNPP GSQRVFPFNN EMRFMPSSEN TGRESLKQTC  240
GAPFTDNRSL VINNSNAFTL RSSFVHEHRS PISSYLKPDM GSSRPAWTGS LSSSVASVPM  300
NEGASTVGNF EKGNNICGSR SLPTLQESQA AVSSEKGAAS NTTSSKKKGS SDDWEPSEPF  360
KASFTIPPYI LPSSDALYNP FTDIENLGDR SRNASLSSKG EQARKNSRQQ KDGDSGSGTQ  420
ARECKNDDKS SSCSQNQHQE SVARRSLEPH GVVEGVATSV VDQNDTTTPS KEISSAXRQQ  480
RREDLSFVNP PGSQRVFSSM SFVNPPGSQR VFPFNNEMRF MPSSENTGRE SLKQTCGAPF  540
TDNRSLVINN SNAFTLRSSF VHEHRSPISS YLKPDMGSSR PAWTGSLSSS VASVPMNEGA  600
STVGNFEKGN NICGSRSLPT LQESQAAVSS EKGAASNTTS SKKKGSSDDW EPSEPFKASF  660
TIPPYILPSS DALYNPFTDI ENLGDRSRNA SLSSKGEQAR KNSRQQKDGD SGSGTQAREC  720
KNDDKSSSCS QNQHQESVAR RSLEPHGVVE GVATSVVDQN DTTTPSKEIS SAAAAENRVV  780
LKRSKPAGHD AWHRSDGSSY KKTLKSDEID GEVRSDAEIK VMRQFRTAVV ETVKEMLKPL  840
WREGRLTKDV HNMIVKKAAE KVVSAAVQFH QVPTDTGSVD QYLGLSATKI VKLVEGYVEK  900
YGKP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269\|PubMed:16291783, ECO:0000269\|PubMed:21282526}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g007280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228866	0.0	AK228866.1 Arabidopsis thaliana mRNA for zinc finger (CCCH type) protein - like, clone: RAFL16-19-E15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010469419.1	0.0	PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
Swissprot	Q84VG7	0.0	FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBL	R0HRT6	0.0	R0HRT6_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010469419.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13468	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	0.0	C3H family protein

Publications ? help Back to Top
Ding L,Kim SY,Michaels SD FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol., 2013. 163(1): p. 243-52 [PMID:23899645]