PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g005510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 322aa MW: 35369.7 Da PI: 8.5987 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 167 | 221 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L +rqV vWFqNrRa+ k Csa16g005510.1 167 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTK 221 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.8 | 1.7e-39 | 167 | 256 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Csa16g005510.1 167 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVSELR-AL 256 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.5E-35 | 1 | 123 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 5.99E-19 | 148 | 224 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-19 | 150 | 221 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 163 | 223 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-15 | 165 | 227 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.2E-16 | 167 | 221 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.22E-15 | 167 | 224 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 198 | 221 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.6E-26 | 223 | 266 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.9E-11 | 223 | 257 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MGERDDGLGL SLSLSLGFNQ KEPSSRSNPM PLASSYSSSP HMHMHMQQQQ SNNYSHPQKN 60 QNSWINMFQS SERNSDMRSF LRGIDVNRAP STVVVDVEDD AAGVSSPNST VSSVMSGKRS 120 ERELMAAAAA AGGGSRVEDN EMERASCSLG GGSDNEDGSG NGDDGSRKKL RLSKEQALVL 180 EETFKEHSTL NPKQKMALAK QLNLRTRQVE VWFQNRRART KLKQTEVDCE YLKRCCENLT 240 EENRRLQKEV SELRALKLSP HLYMHMKPPT TLTMCPSCER VAVTSSPSSV APPVMTSSSP 300 MGPMSPWAAI PLRQRPAAGS H* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 171 | SRKKLRL |
2 | 215 | 223 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g005510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ440781 | 0.0 | AJ440781.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT3 (hat3 gene). | |||
GenBank | AY099565 | 0.0 | AY099565.1 Arabidopsis thaliana homeobox-leucine zipper protein HAT3 (At3g60390) mRNA, complete cds. | |||
GenBank | BT008713 | 0.0 | BT008713.1 Arabidopsis thaliana At3g60390 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010469193.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT3 | ||||
Swissprot | P46602 | 0.0 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | D7LRP7 | 0.0 | D7LRP7_ARALL; Uncharacterized protein | ||||
STRING | XP_010469193.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2577 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 1e-126 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
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