PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g002750.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 337aa MW: 38168.1 Da PI: 6.0517

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g002750.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.4	2e-51	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kk+++ k++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat+ g+Wkatg+dk + Csa16g002750.1 11 VPPGFRFHPTEEELLQYYLRKKISNVKIDL-NVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATTVGFWKATGRDKII 104 69**************************.99**********962433332455********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g +g++ktLvfykgrap+g+k+dW+mheyrl Csa16g002750.1 105 YT-NGDRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 9.9999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-56	8	177	IPR003441	NAC domain
PROSITE profile	PS51005	55.03	11	177	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MNISVNGQSQ VPPGFRFHPT EEELLQYYLR KKISNVKIDL NVIRDVDLNK LEPWDIQEMC 60 KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT TVGFWKATGR DKIIYTNGDR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD ESSVLMSSNH DDDVTVEQTC EAIGCDEGWV VCRVFKKKSL 180 CKTMISSPGI SVKTPSFNDE TIEHLPEAMG QSCKEEIVLD PFLKLPNLDN NCHVSKVVDP 240 SFVTSWAALD RLVASQLNGP NSYLIPAVSE TSESPFHELN RSGYYTGLST DNYIPEMDLW 300 NDAEFERPTT SSSNPLCHVS NGSGCRKMEV AYQNIV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	8	179	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	8	179	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	8	179	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	8	179	14	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	8	179	17	170	NAC domain-containing protein 19
3swm_B	1e-49	8	179	17	170	NAC domain-containing protein 19
3swm_C	1e-49	8	179	17	170	NAC domain-containing protein 19
3swm_D	1e-49	8	179	17	170	NAC domain-containing protein 19
3swp_A	1e-49	8	179	17	170	NAC domain-containing protein 19
3swp_B	1e-49	8	179	17	170	NAC domain-containing protein 19
3swp_C	1e-49	8	179	17	170	NAC domain-containing protein 19
3swp_D	1e-49	8	179	17	170	NAC domain-containing protein 19
4dul_A	1e-49	8	179	14	167	NAC domain-containing protein 19
4dul_B	1e-49	8	179	14	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269\|PubMed:16214898}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g002750.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084323	0.0	AY084323.1 Arabidopsis thaliana clone 103969 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010469006.1	0.0	PREDICTED: NAC domain-containing protein 66-like
Swissprot	Q9M274	0.0	NAC66_ARATH; NAC domain-containing protein 66
TrEMBL	R0FTN1	0.0	R0FTN1_9BRAS; Uncharacterized protein
STRING	XP_010469006.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM778	28	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61910.1	0.0	NAC domain protein 66

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622]