PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16729s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 70aa    MW: 7935.91 Da    PI: 4.1607
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16729s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.43e-151070148
             NAM  1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLp 48
                    lppGfrFhP+deelv++yL++k+++k+           e          + e+d++ +ePw+Lp
  Csa16729s010.1 10 LPPGFRFHPSDEELVCHYLCNKIRAKSdqgdvedD---EvdealkdatDLVEIDLHICEPWQLP 70
                    79**********************99977665551...15556666535999***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-13870IPR003441NAC domain
PROSITE profilePS5100516.51070IPR003441NAC domain
PfamPF023651.9E-81152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDQGD VEDDEVDEAL KDATDLVEID  60
LHICEPWQLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16729s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382742e-77KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010433206.12e-43PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_010447967.22e-43PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLR0F6072e-41R0F607_9BRAS; Uncharacterized protein
STRINGXP_010433206.17e-43(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2741233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.26e-35NAC domain containing protein 74