PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g079210.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 216aa    MW: 24928.8 Da    PI: 4.9271
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g079210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.9e-2057110457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq++ Le  Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Csa15g079210.1  57 KRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 110
                     45899***********************************************95 PP
2HD-ZIP_I/II123.11.4e-3956147293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kr+ls+eqv++LE sFe ++kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k++E +y++Lk+ay++++ +++rL++ev +L+e+l e
  Csa15g079210.1  56 RKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYENVVVDRCRLDSEVLQLKEQLYE 147
                     8***************************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.02251111IPR001356Homeobox domain
SuperFamilySSF466894.6E-1854118IPR009057Homeodomain-like
SMARTSM003893.0E-2054115IPR001356Homeobox domain
CDDcd000862.95E-1756112No hitNo description
PfamPF000464.7E-1757110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-2058117IPR009057Homeodomain-like
PRINTSPR000311.4E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000311.4E-591107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MNNQNVDDHN LLLISQLYPD VYTSLVPQQG EAKPARRRKR KSKSAAVGEG GNGWFRKRKL  60
SDEQVRMLEI SFEDDHKLES ERKDRLASEL GLDPRQVAVW FQNRRARWKN KRVEDEYTKL  120
KNAYENVVVD RCRLDSEVLQ LKEQLYEAER EIQSLAQRVE GTLISNSPIS SSVTVEANQA  180
TPFFGDYDIC VDGDGDNLLY SPDYFDGLEW MSQFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13858KRKSKSAAVGEGGNGWFRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g079210.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0313621e-177BT031362.1 Arabidopsis thaliana unknown protein (At2g18550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467685.11e-159PREDICTED: homeobox-leucine zipper protein ATHB-21-like isoform X2
SwissprotQ9ZU701e-134ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLR0I4Z61e-141R0I4Z6_9BRAS; Uncharacterized protein
STRINGXP_010467684.11e-157(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-126homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]