PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g075990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 361aa    MW: 40087 Da    PI: 3.947
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g075990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.53.5e-081249239
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                     i  k  r v +skR +g+  KA  ++ L da++a++ 
  Csa15g075990.1 12 MIGKKDSRAVAYSKRTKGLYSKAAKICRLADAQIAILA 49
                    5777889****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-4366IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.04348IPR002100Transcription factor, MADS-box
CDDcd002663.01E-14581No hitNo description
SuperFamilySSF554555.1E-12577IPR002100Transcription factor, MADS-box
PfamPF003192.1E-71363IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGGLKQKIPI KMIGKKDSRA VAYSKRTKGL YSKAAKICRL ADAQIAILAT PVSSNSNASF  60
YTFGHSSVDS VVAAFLANER PLREDLGLGL GFWWEDERLA KSEDPEELGD AINSMSKMLQ  120
DLKDLRCNAL QNRRDCTEDV EEKEGLLDGT HQNHTLNNPE SCCDNDNNYA LLGNVDGCNQ  180
ELLDIDQIIN FESTSSSVNS ELENMISMVT PNHQNSFSDH SNAIIVDEGL VVHTDLYDDN  240
NIHLSNLDED LMLQISDNNN NNSINNNVEE LENFDEFIQE LDLDDIFDFK TNYVQSLEMD  300
GVSMVTTTNQ DLGLNSETVG DGGLVMTHID LDEDNLCFSD YFNDLTSSAQ NSLQDMYTTS  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g075990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468704.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A178UP041e-109A0A178UP04_ARATH; AGL99
TrEMBLQ9LZ611e-109Q9LZ61_ARATH; AGAMOUS-like 99
STRINGXP_010468704.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.11e-110AGAMOUS-like 99