PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g074090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 310aa    MW: 35646.1 Da    PI: 9.5941
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g074090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.41e-4381623128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...........................kvka..eekewyfFskrdkk 67 
                     pGfrFhPt+eel+++yLk+ v gk+ ++ evi  ++iy+++PwdLp k                           +     +e+ewyfF++r++k
  Csa15g074090.1   8 PGFRFHPTEEELLDFYLKNMVYGKRSNV-EVIGFLNIYRHDPWDLPgKctwllqypktlfvsrfvlkvlfiitglS--RilGEREWYFFVPRERK 99 
                     9************************999.99***************6599**********9999998888776552..145899*********** PP

             NAM  68 yatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +g r++r+t++gyWkatg+d++++s    ++++glkktLvfy+grap g+ktdWvm+e+r+
  Csa15g074090.1 100 HGNGGRPSRTTEKGYWKATGSDRKIISLsePKRVIGLKKTLVFYRGRAPGGSKTDWVMNEFRM 162
                     *************************987557778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-49654IPR003441NAC domain
PROSITE profilePS5100550.0786180IPR003441NAC domain
PfamPF023656.3E-248162IPR003441NAC domain
SuperFamilySSF1019413.79E-4979180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGKETELPGF RFHPTEEELL DFYLKNMVYG KRSNVEVIGF LNIYRHDPWD LPGKCTWLLQ  60
YPKTLFVSRF VLKVLFIITG LSRILGEREW YFFVPRERKH GNGGRPSRTT EKGYWKATGS  120
DRKIISLSEP KRVIGLKKTL VFYRGRAPGG SKTDWVMNEF RMPDNCTLPK DVVLCKIYRK  180
ATSLKVLEQR AEMEAKMNQT CPNSPLSSSE TISFVGKEEN SMMMTSFRVP QESAMEEANK  240
ILTIQENAKN EEKQREAETR ETSSSLKLPF GSLPELQLPK QGVEWGPDQL LSISPWLQNL  300
TPIVNLLNW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-40818522173NAC domain-containing protein 19
3swm_B4e-40818522173NAC domain-containing protein 19
3swm_C4e-40818522173NAC domain-containing protein 19
3swm_D4e-40818522173NAC domain-containing protein 19
3swp_A4e-40818522173NAC domain-containing protein 19
3swp_B4e-40818522173NAC domain-containing protein 19
3swp_C4e-40818522173NAC domain-containing protein 19
3swp_D4e-40818522173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g074090.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3618040.0AF361804.1 Arabidopsis thaliana At2g17040 mRNA, complete cds.
GenBankAY1021400.0AY102140.1 Arabidopsis thaliana At2g17040/At2g17040 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467456.10.0PREDICTED: NAC domain-containing protein 35
SwissprotQ10S653e-82NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLR0I4C90.0R0I4C9_9BRAS; Uncharacterized protein
STRINGXP_010467456.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.10.0NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]