PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g071540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 334aa    MW: 37863.8 Da    PI: 10.1376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g071540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.3e-19771561699
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       lp +f+++++  ke s ++++++++grsWev +  +k+++  ++ ++GWk+Fv++n L   +f++F+++++++f  +vk+f++
  Csa15g071540.1  77 RALPHDFTRSFSD-KELSCKMKIRTQWGRSWEVGI--SKNPRFyFMEKSGWKKFVSDNALGHSEFITFTHKRKMDF--TVKIFKQ 156
                     469*****99964.57899****************..******555569********************9998999..9999986 PP
2B340.45.3e-132533301594
                     -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      l +pk+fa+ h + ++++ t ++ +++g rsW+v +    ++ + ++++GW + +k+  L +g ++ F+l++ +e  lvv
  Csa15g071540.1 253 YLLIPKSFANYHHI-PKKKATFKIHHPDGkRSWDVAY--LPRKTHDIFSAGWLRLCKDYPLAVGHTCEFTLIKPKELLLVV 330
                     589******66655.55778*********99******..777777789***********************9876665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-171633IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.6E-1662157IPR003340B3 DNA binding domain
PfamPF023626.8E-1777156IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-1778158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-1578161IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.85779157IPR003340B3 DNA binding domain
CDDcd100171.53E-1479155No hitNo description
Gene3DG3DSA:2.40.330.104.7E-14235328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-15235329IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.545239333IPR003340B3 DNA binding domain
SMARTSM010191.4E-10241333IPR003340B3 DNA binding domain
PfamPF023623.9E-10253331IPR003340B3 DNA binding domain
CDDcd100171.07E-10254329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MTRNSDFLGV IKERNNGSFF MILQTVNVSS EYMGLKKTSL VTAIFIFNEH GFVESLSSLS  60
GMCGSMLYSS PLFLLDRALP HDFTRSFSDK ELSCKMKIRT QWGRSWEVGI SKNPRFYFME  120
KSGWKKFVSD NALGHSEFIT FTHKRKMDFT VKIFKQDGKE MIQPPQPAAF LASSSSIEIE  180
QEEDDKREDV VDLTRAAESN GRKLKFGKKP AEGSQSSKRA EKLVCPGRGV PGTSSSTAVK  240
FTIIINRPYL LQYLLIPKSF ANYHHIPKKK ATFKIHHPDG KRSWDVAYLP RKTHDIFSAG  300
WLRLCKDYPL AVGHTCEFTL IKPKELLLVV SIP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g071540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133947e-69AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
GenBankCP0026887e-69CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467311.10.0PREDICTED: B3 domain-containing protein At2g16210-like
SwissprotQ5BPT71e-106Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7L1431e-117D7L143_ARALL; Transcriptional factor B3 family protein
STRINGXP_010467311.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.11e-103B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]