PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g069940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 330aa MW: 36552.3 Da PI: 4.5791 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.1 | 2e-10 | 254 | 294 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Csa15g069940.1 254 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 294 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.148 | 244 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-14 | 245 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-12 | 249 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-11 | 250 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.37E-11 | 253 | 298 | No hit | No description |
Pfam | PF00010 | 9.9E-8 | 254 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MEAMGEWSTG LGGMYTEEAD FMNQLLASYE QPCGGSSSET TTTLAAYHHG QGSQWTGGFC 60 FSQESSSYSG YCTVVPQQEE DDNRMEDSTI NTDLYLVGEE TCECDVAEYS RKGLLPLENA 120 EESHDHSVLQ PENSLTTTID EKLLRPCESS KKRMRATSSD KNKRANKTRR SQKGVEMSGD 180 NDNSGEEEDT EKAAGKRNTK PSKSQKTCCS DDESNGGDTF ISKEDGEDSK ALNLNGKTRA 240 SRGAATDPQS LYARKRRERI NERLRILQNL VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL 300 SSDDLWMYAP IAYNGMDIGL DLKLNALTR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g069940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ577584 | 0.0 | AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene). | |||
GenBank | DQ446497 | 0.0 | DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010467258.1 | 0.0 | PREDICTED: transcription factor bHLH84-like | ||||
Swissprot | Q7XHI9 | 0.0 | BH084_ARATH; Transcription factor bHLH84 | ||||
TrEMBL | D7L2Q6 | 0.0 | D7L2Q6_ARALL; Basic helix-loop-helix protein | ||||
STRING | XP_010467258.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2834 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 0.0 | bHLH family protein |