PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g034670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 283aa    MW: 31870.1 Da    PI: 6.6506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g034670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-081712101255
                     H.HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 R.RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R R+ i +++ +L +l+P+      +K+s a iLe+A +YIk Lq
  Csa15g034670.1 171 RkRKTISNKIRTLEKLMPWE-----RKMSLAVILEEAHKYIKFLQ 210
                     44999**************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.039160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0069167215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-5171214No hitNo description
SuperFamilySSF474591.57E-8171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-8171216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5171210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MESSAYEFDS LTDLPPLPEE YKPTVVDYSR SFDSLPPFPP SDFTFSDHHH QHYLDSSLSL  60
SDSIFLDSTL SLLNRHHLSV SPRLEQNLFY EPIRFNQLFP NNDAPFLHLP DLKSIEQTVE  120
EPTLTTMELF PSLCPPPPAA KRHKKLHSST SSTTSGSPTA SSSHNTNDGG RKRKTISNKI  180
RTLEKLMPWE RKMSLAVILE EAHKYIKFLQ SQIASLLWMP LDSVYNTAGE VGESDLLKSL  240
TRQQILQVLA NSPGSRNLLS THGLCVFSYE QLLTLKAMTR NL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g034670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466473.10.0PREDICTED: transcription factor bHLH117-like
SwissprotQ9LRJ41e-103BH117_ARATH; Transcription factor bHLH117
TrEMBLR0GAQ11e-119R0GAQ1_9BRAS; Uncharacterized protein
STRINGXP_010466473.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.16e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]