PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g027510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 288aa    MW: 30956.8 Da    PI: 8.8158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g027510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012115137123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cgk F++   L  H  +H
  Csa15g027510.1 115 YKCSVCGKAFPSYQALGGHKASH 137
                     9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-9114137No hitNo description
PfamPF139121.8E-13115138IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.801115142IPR007087Zinc finger, C2H2
SMARTSM003550.0043115137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4115137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-9172199No hitNo description
PfamPF139129.7E-14177201IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099177199IPR007087Zinc finger, C2H2
SMARTSM003550.17177199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MALEAMNSPS SFTTRIETKE DLMNDAVFME PWLKRKRSKR QRSHSPSSSS SSPPRSRPKS  60
QNHQDLTEEE YLALCLLMLA KDQPSSTTTQ TRFHHSQPQT QTPPPESSKT LSSSYKCSVC  120
GKAFPSYQAL GGHKASHRIK PPTVTPNPDD PSSTAAPTVS AAAAGEKHPI SASGKIHECS  180
ICHKVFPTGQ ALGGHKRCHY EGNLGGGGGG SKSISHSGSV SSTVSEERSN RGFIDLNLPA  240
LPELSLHHNP IAAVDEEILS PLTGKKPLLL TDHDQVIKKE ADLSLRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13239LKRKRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g027510.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466108.10.0PREDICTED: zinc finger protein AZF2
SwissprotQ9SSW21e-127AZF2_ARATH; Zinc finger protein AZF2
TrEMBLD7LA101e-125D7LA10_ARALL; Uncharacterized protein
STRINGXP_010466108.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102721829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-104zinc-finger protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]