PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g021240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 387aa    MW: 41466.2 Da    PI: 8.8186
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g021240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-13132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
   Csa15g021240.1 132 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 176
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576133No hitNo description
Gene3DG3DSA:4.10.60.108.2E-4222IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.516125181IPR017930Myb domain
SuperFamilySSF466898.97E-17127181IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17128179IPR006447Myb domain, plants
SMARTSM007171.5E-9129179IPR001005SANT/Myb domain
PfamPF002498.7E-11132176IPR001005SANT/Myb domain
CDDcd001673.32E-9132177No hitNo description
Gene3DG3DSA:1.10.10.601.2E-10132175IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGTCGGGGGG GSCSSSAVKL FGVRLTDGSI IKKSASMGNL  60
SALAVAAAAA TTHHHHRLSP SSPLATSNHN DSPLSDHARY SGLHHNEGYL SDDPAHGSGS  120
SHRRGERKRG IPWTEEEHRL FLVGLQKLGK GDWRGISRNY VTSRTPTQVA SHAQKYFIRH  180
TSSSRRKRRS SLFDMVTDEM VMESSPIQED QTVNRSSPSK ELENKSHLPS LELSLNNTTE  240
PEAVIAKAPP QELPEEAIEP SNGVSPMLVP GGFFPPCFPV TYTIWLPATS TSLQGTEHVL  300
EAETSSQQHQ VLKPKPGFAK ERVNMDELVG MSQLSIGMGT KHGTETSPSA SPLSLRLEPS  360
RPSAFHSNGS VNGADLSKGN SAIQAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g021240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465657.10.0PREDICTED: uncharacterized protein LOC104745965
TrEMBLR0HYV30.0R0HYV3_9BRAS; Uncharacterized protein
STRINGXP_010465657.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.10.0MYB_related family protein