PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g019650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 35330.1 Da PI: 7.0857 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.1 | 1.7e-53 | 31 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhP deel+++yL kkv ++++++ +i++vd++k+ePw+Lp+k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkd+e++s+ Csa15g019650.1 31 MPPGFRFHPPDEELITYYLLKKVLDSNFSC-AAISQVDLNKSEPWELPEKAKMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSS 124 79****************************.88***************99999****************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++l g+kktLvfykgrapkgek+ Wvmheyrl Csa15g019650.1 125 kTKSLLGMKKTLVFYKGRAPKGEKSCWVMHEYRL 158 56677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-61 | 27 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.982 | 31 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-27 | 32 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
SFSLVFVCVP TMDIDVFNGW ERSKFEDETL MPPGFRFHPP DEELITYYLL KKVLDSNFSC 60 AAISQVDLNK SEPWELPEKA KMGEKEWYFF TLRDRKYPTG LRTNRATEAG YWKATGKDRE 120 IKSSKTKSLL GMKKTLVFYK GRAPKGEKSC WVMHEYRLDG KFSYHYISSS AKDEWVLCKV 180 CLKSSVVSRE TNLISSSFSS AVAGEFSSAG SAIAPIINNF ATEHVSCFSN NSASSHTEAS 240 FPTTYLPAPP PSLPPRHVDD DVAFGQFLDL GSSGQISFDA AAAAAFFPNL PSLPPTMLPS 300 PTSFTMFGGG SASVWPFAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-50 | 31 | 189 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-50 | 31 | 189 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-50 | 31 | 189 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-50 | 31 | 189 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-50 | 31 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-50 | 31 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-50 | 31 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-50 | 31 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-50 | 31 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-50 | 31 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-50 | 31 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-50 | 31 | 189 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-50 | 31 | 189 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-50 | 31 | 189 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:11245578, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:12787253, ECO:0000269|PubMed:14617069, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g019650.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. Directly induced by ESR2 in response to cytokinins. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB049069 | 0.0 | AB049069.1 Arabidopsis thaliana CUC1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010465466.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 1-like | ||||
Swissprot | Q9FRV4 | 1e-174 | NAC54_ARATH; Protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | D7L3Z7 | 1e-179 | D7L3Z7_ARALL; Cup-shaped cotyledon1 | ||||
STRING | XP_010465466.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13481 | 15 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15170.1 | 1e-170 | NAC family protein |