PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g016960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 284aa    MW: 32915.5 Da    PI: 10.2039
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g016960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.61.4e-50341591128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhP+d+elv++yL +++ ++  +   v+ +vd++k+ePw++p++++ ++kewyf+s++d+kyatg+r+nrat+ gyWkatgkd+ + + 
  Csa15g016960.1  34 LPPGFRFHPRDDELVCDYLMRRTVRSLYQP-VVLIDVDLNKCEPWNIPQTARVGRKEWYFYSQKDRKYATGQRTNRATAIGYWKATGKDRVIQR- 126
                     79*****************99977777555.5899*************9889999***********************************9999. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g+ vg++ktLvfy+grapkg+ktdWvmhe+rl
  Csa15g016960.1 127 NGSIVGMRKTLVFYQGRAPKGRKTDWVMHEFRL 159
                     999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5826184IPR003441NAC domain
PROSITE profilePS5100555.10234183IPR003441NAC domain
PfamPF023652.2E-2535159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MIKNTIIAKQ IFRYMEMENK EEKKGSISMV EANLPPGFRF HPRDDELVCD YLMRRTVRSL  60
YQPVVLIDVD LNKCEPWNIP QTARVGRKEW YFYSQKDRKY ATGQRTNRAT AIGYWKATGK  120
DRVIQRNGSI VGMRKTLVFY QGRAPKGRKT DWVMHEFRLQ GSLLHHPPNS LKEEWVLCRV  180
FHKNSSITES DGNTRSCLSH ERNSALMDSY IIFDHHNIIS NQNVPCFSNV SQNQTNQSGL  240
ISKSSNPLYN ASSDQLVLRA YLSQLPKNVE NRRVTEKEAR RAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-512918612168NO APICAL MERISTEM PROTEIN
1ut4_B3e-512918612168NO APICAL MERISTEM PROTEIN
1ut7_A3e-512918612168NO APICAL MERISTEM PROTEIN
1ut7_B3e-512918612168NO APICAL MERISTEM PROTEIN
3swm_A3e-512918615171NAC domain-containing protein 19
3swm_B3e-512918615171NAC domain-containing protein 19
3swm_C3e-512918615171NAC domain-containing protein 19
3swm_D3e-512918615171NAC domain-containing protein 19
3swp_A3e-512918615171NAC domain-containing protein 19
3swp_B3e-512918615171NAC domain-containing protein 19
3swp_C3e-512918615171NAC domain-containing protein 19
3swp_D3e-512918615171NAC domain-containing protein 19
4dul_A3e-512918612168NAC domain-containing protein 19
4dul_B3e-512918612168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g016960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266454e-85AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBankCP0026864e-85CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499726.11e-171PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-113NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1J3GCU01e-158A0A1J3GCU0_NOCCA; NAC domain-containing protein 21/22
STRINGXP_010499726.11e-170(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.11e-157NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]