PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g013970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 452aa    MW: 50952.8 Da    PI: 6.3382
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g013970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.6e-53271541128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL   +++k++++ewyfFs  dkky +g r nrat++gyWkatgkd+e+ 
  Csa15g013970.1  27 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDREIR 120
                     579************************999.99**************8544899999************************************** PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + + +l g+kktLvf++grap+g +t+Wvmheyrl
  Csa15g013970.1 121 R-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154
                     9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-6120178IPR003441NAC domain
PROSITE profilePS5100557.44227177IPR003441NAC domain
PfamPF023651.4E-2729154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGRESLAAVS SPPSATAPST AVSATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG  60
EVDIYKHEPW DLAVFSRLKT RDQEWYFFSA LDKKYGNGAR MNRATNKGYW KATGKDREIR  120
RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE NNGSLLDAYV LCRVFHKNNI  180
GPPSGNRYAP FMEEEWADGG GALIPGVDVR VRVEPQPQAN GNNQMDQEIH SASKNLININ  240
ELPRDGTPMD IEPNQQNHHE SDIKPQEHNN RNGYDEDEET LKREHAEEED ERRPSVCILN  300
KEAPLPLLQY KRRRQNESSN NSSRNSQDHC SSTITTVDNT TTLISSSAAA TNTAISALLE  360
FSLMGISDKK ENQQKQLRPH KEATPSTPLA SSEEKVNGLQ KEIHQMSVER ETFKLEMMSA  420
EAMISILQSR IDALRQENEE LKKNNASGQA S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-502217912167NO APICAL MERISTEM PROTEIN
1ut4_B5e-502217912167NO APICAL MERISTEM PROTEIN
1ut7_A5e-502217912167NO APICAL MERISTEM PROTEIN
1ut7_B5e-502217912167NO APICAL MERISTEM PROTEIN
3swm_A5e-502217915170NAC domain-containing protein 19
3swm_B5e-502217915170NAC domain-containing protein 19
3swm_C5e-502217915170NAC domain-containing protein 19
3swm_D5e-502217915170NAC domain-containing protein 19
3swp_A5e-502217915170NAC domain-containing protein 19
3swp_B5e-502217915170NAC domain-containing protein 19
3swp_C5e-502217915170NAC domain-containing protein 19
3swp_D5e-502217915170NAC domain-containing protein 19
4dul_A5e-502217912167NAC domain-containing protein 19
4dul_B5e-502217912167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g013970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0597950.0AY059795.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds.
GenBankAY0912620.0AY091262.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464724.10.0PREDICTED: NAC domain-containing protein 59-like isoform X1
RefseqXP_010464725.10.0PREDICTED: NAC domain-containing protein 59-like isoform X1
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLR0G4Z30.0R0G4Z3_9BRAS; Uncharacterized protein
STRINGXP_010464724.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.20.0NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]