PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g009810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 324aa    MW: 36466.4 Da    PI: 7.7435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g009810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.5e-06527326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    + lC+ f+  G C  G++C F+H+
  Csa15g009810.1  5 RILCK-FFVHGSCLKGENCEFSHD 27
                    569**.7777*************6 PP
2zf-CCCH222.9e-073555526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C f+++ G+C yG+rC++ H+
  Csa15g009810.1 35 VCTFYQK-GICFYGSRCRYDHV 55
                    5******.*************7 PP
3zf-CCCH20.86.9e-07109131326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ fa+ G C++G++C+ +Hg
  Csa15g009810.1 109 YPICS-FAAAGDCPRGNQCPHMHG 131
                     78999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.037229IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7427IPR000571Zinc finger, CCCH-type
PfamPF156635.9E-8765No hitNo description
Gene3DG3DSA:4.10.1000.103.4E-4730IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2673057IPR000571Zinc finger, CCCH-type
SMARTSM003560.00213156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-53254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.155106133IPR000571Zinc finger, CCCH-type
SMARTSM003560.028106132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.5E-10159234IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.91E-12164239No hitNo description
CDDcd001620.00132174234No hitNo description
PfamPF000974.4E-8175232IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.401175233IPR001841Zinc finger, RING-type
SMARTSM001841.9E-7175232IPR001841Zinc finger, RING-type
PROSITE patternPS005180199208IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.929262291IPR000571Zinc finger, CCCH-type
SMARTSM003560.32262290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSSDRILCKF FVHGSCLKGE NCEFSHDSKD PPNNVCTFYQ KGICFYGSRC RYDHVRASSN  60
VPQTPPLTSD SESLDRSLSS TTPSMRNLQQ QQQGDDKSSN VYCIHPREYP ICSFAAAGDC  120
PRGNQCPHMH GDLCATCGKK CLHPFRPEER EEHTKECVKK QKHIEALKRS QDIECSVCLD  180
RVLSKATPGE RKFGLLTECD HPFCIQCIRN WRSSAPVSGM DVNSTLRACP ICRKLSYFVV  240
PSVVWYSTPE EKKEIIDIYK AKLRSIDCKH FNFGNGSCPF GASCFYKHAY SDGHLEEVVL  300
RHLGTQEGDN IRLSELLGGL QIF*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g009810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0009880.0BT000988.1 Arabidopsis thaliana clone U18319 unknown protein (At3g08505) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464459.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLR0G6500.0R0G650_9BRAS; Uncharacterized protein
STRINGXP_010464459.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.20.0C3H family protein