PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g003950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 40843.6 Da PI: 8.3505 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.4e-53 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL+kkv++++++l ++i++vdiyk++PwdLp+k+ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + ++ Csa15g003950.1 10 LPPGFRFHPTDEELILHYLRKKVSSSPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVS 103 79****************************.89***************988899***************************************98 PP NAM 96 kgel....vglkktLvfykgrapkgektdWvmheyrl 128 +g+ +g+kk Lvfy+g+ pkg+kt+W+mheyrl Csa15g003950.1 104 NGQGfhenIGIKKALVFYRGKPPKGVKTNWIMHEYRL 140 44434555***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-61 | 7 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.783 | 10 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-28 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSSPVPLS IIADVDIYKS DPWDLPAKAP 60 FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVSNGQGFHE NIGIKKALVF 120 YRGKPPKGVK TNWIMHEYRL AESLFPKRIN SSSSQVNNFG DRSLKSKEYS MRLDDWVLCR 180 IYKKSHASVS SSDVASVTSN QEQEEIDNEP LFVDRGTFLQ NEQQQPLKRQ KSSFSNLLDA 240 TDFTFLTNFL NETPESRTES DFSFMVSNFS NPDIYGNHYL DQKLPQLSSP TSETSGIGNK 300 RERLDFAEET MNTSKKMMNY YSYNNSIDQL DHSMIQQSSF LNQELLMSSH SHYQGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-71 | 9 | 188 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-71 | 9 | 188 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-71 | 9 | 188 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-71 | 9 | 188 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swm_B | 8e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swm_C | 8e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swm_D | 8e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swp_A | 8e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swp_B | 8e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swp_C | 8e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swp_D | 8e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
4dul_A | 7e-71 | 9 | 188 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 7e-71 | 9 | 188 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g003950.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227417 | 0.0 | AK227417.1 Arabidopsis thaliana mRNA for NAM-like protein, complete cds, clone: RAFL14-07-D22. | |||
GenBank | BT005985 | 0.0 | BT005985.1 Arabidopsis thaliana At3g04070 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010463881.1 | 0.0 | PREDICTED: NAC transcription factor 25 | ||||
Swissprot | Q84TD6 | 0.0 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A178VJ79 | 0.0 | A0A178VJ79_ARATH; NAC047 | ||||
STRING | XP_010463881.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7723 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 0.0 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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