PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g003940.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 501aa MW: 56552.1 Da PI: 8.3168

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g003940.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.9	4.7e-54	20	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++++yLk+kv + ++++ +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdke+++ Csa15g003940.1 20 LPPGFRFHPTDEEIITHYLKEKVFNIRFTA-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRG 113 79***********************999.78***********8888899***********************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 kg lvg+kktLvfykgrapkgekt+Wvmheyrl Csa15g003940.1 114 KGCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 146 *****************************98 PP
2	NAM	173.9	4.7e-54	180	306	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++++yLk+kv + ++++ +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdke+++ Csa15g003940.1 180 LPPGFRFHPTDEEIITHYLKEKVFNIRFTA-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRG 273 79***********************999.78***********8888899***********************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 kg lvg+kktLvfykgrapkgekt+Wvmheyrl Csa15g003940.1 274 KGCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 306 *****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-57	17	157	IPR003441	NAC domain
PROSITE profile	PS51005	52.473	20	164	IPR003441	NAC domain
Pfam	PF02365	2.1E-28	21	146	IPR003441	NAC domain
SuperFamily	SSF101941	6.8E-62	176	332	IPR003441	NAC domain
PROSITE profile	PS51005	58.234	180	331	IPR003441	NAC domain
Pfam	PF02365	2.1E-28	181	306	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MVEEGSVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN 60 EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY WKATGKDKEI FRGKGCLVGM 120 KKTLVFYKGR APKGEKTNWV MHEYRLDGKY SYNNLPKTAR MVEEGSVVVN QGGDQEVVDL 180 PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN EPWDLPKIAK MGEKEFYFFC 240 QRDRKYPTGM RTNRATVSGY WKATGKDKEI FRGKGCLVGM KKTLVFYKGR APKGEKTNWV 300 MHEYRLDGKY SYNNLPKTAR DEWVVCRVFH KNAPTTTINT PNQLSRIDSL DNIDHLLDFS 360 SLPPLIDPGF LSQPGPSFSG ASHELKPVLH HPSTALVNNT YLPTQTLNFP YHSVQNFRSD 420 SGYGAGSDTN NKGMIKLEHS LVSASQETGL SSDVNTTATP EISSYPLMMN PATDGAMMDG 480 SKSACDDLDD LIFWEDLYTK *

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MVEEGSVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN  60
EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY WKATGKDKEI FRGKGCLVGM  120
KKTLVFYKGR APKGEKTNWV MHEYRLDGKY SYNNLPKTAR MVEEGSVVVN QGGDQEVVDL  180
PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN EPWDLPKIAK MGEKEFYFFC  240
QRDRKYPTGM RTNRATVSGY WKATGKDKEI FRGKGCLVGM KKTLVFYKGR APKGEKTNWV  300
MHEYRLDGKY SYNNLPKTAR DEWVVCRVFH KNAPTTTINT PNQLSRIDSL DNIDHLLDFS  360
SLPPLIDPGF LSQPGPSFSG ASHELKPVLH HPSTALVNNT YLPTQTLNFP YHSVQNFRSD  420
SGYGAGSDTN NKGMIKLEHS LVSASQETGL SSDVNTTATP EISSYPLMMN PATDGAMMDG  480
SKSACDDLDD LIFWEDLYTK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	18	333	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	18	333	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	18	333	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	18	333	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	18	333	18	170	NAC domain-containing protein 19
3swm_B	1e-49	18	333	18	170	NAC domain-containing protein 19
3swm_C	1e-49	18	333	18	170	NAC domain-containing protein 19
3swm_D	1e-49	18	333	18	170	NAC domain-containing protein 19
3swp_A	1e-49	18	333	18	170	NAC domain-containing protein 19
3swp_B	1e-49	18	333	18	170	NAC domain-containing protein 19
3swp_C	1e-49	18	333	18	170	NAC domain-containing protein 19
3swp_D	1e-49	18	333	18	170	NAC domain-containing protein 19
4dul_A	1e-49	18	333	15	167	NAC domain-containing protein 19
4dul_B	1e-49	18	333	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g003940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084852	0.0	AY084852.1 Arabidopsis thaliana clone 119460 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010463878.1	0.0	PREDICTED: NAC domain-containing protein 92-like isoform X2
Refseq	XP_010463880.1	0.0	PREDICTED: NAC domain-containing protein 92-like isoform X1
Swissprot	Q9SQQ6	0.0	NAC46_ARATH; NAC domain-containing protein 46
TrEMBL	A0A178VF11	0.0	A0A178VF11_ARATH; NAC046
STRING	XP_010463880.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04060.1	0.0	NAC domain containing protein 46

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Oda-Yamamizo C, et al. Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves. Sci Rep, 2016. 6: p. 35125 [PMID:27759025] O'Shea C, et al. Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1. J. Biol. Chem., 2017. 292(2): p. 512-527 [PMID:27881680]