PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g001510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 471aa    MW: 51161.4 Da    PI: 8.0094
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g001510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.5e-32206262259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK++kg e+prsYY+Ct+a+Cpvkkkvers+ d+++++i+Y+g+H+he
  Csa15g001510.1 206 DDGYNWRKYGQKPIKGCEYPRSYYKCTHANCPVKKKVERSS-DGQITQIIYKGQHDHE 262
                     8****************************************.***************8 PP
2WRKY105.13.7e-33351409159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  Csa15g001510.1 351 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDAKAVITTYEGKHNHD 409
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-29197264IPR003657WRKY domain
SuperFamilySSF1182902.22E-25203264IPR003657WRKY domain
SMARTSM007742.0E-35205263IPR003657WRKY domain
PROSITE profilePS5081124.306206264IPR003657WRKY domain
PfamPF031065.5E-25206261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-36336411IPR003657WRKY domain
SuperFamilySSF1182904.32E-29343411IPR003657WRKY domain
PROSITE profilePS5081137.734346411IPR003657WRKY domain
SMARTSM007743.8E-38351410IPR003657WRKY domain
PfamPF031061.6E-25352409IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAVEDDVSSI RTTTLVAPTR PTITVPQRPP AIETAAYFFG GGDGLSLSPG PLSFVSSLFV  60
DSFPDVLTPD NQRTTSFSQL LAGAMSVSPG AGGGGRSTAG MFAGGGPMFT IPSGISPSSL  120
LTSPMFFPPH QSPVQTGFVQ PQPQPQPQQP GTFSHHMPTS TSTIHGRQSF EVSQADQRAR  180
NHHNNQANNN TNNRSYNVVN VDKPADDGYN WRKYGQKPIK GCEYPRSYYK CTHANCPVKK  240
KVERSSDGQI TQIIYKGQHD HERPQNRRGG GGRDSVEVGD IHFVGGAGHM IESSDDSGYG  300
KDHDDDNNDD DDEDDDLPGS KIRKIDGVST THRTVTEPKI IVQTRSEVDL LDDGYRWRKY  360
GQKVVKGNPH PRSYYKCTTA NCTVRKHVER ASTDAKAVIT TYEGKHNHDV PAARNGTAAA  420
TAAAAGTSDQ HRMRSMSGNN MQQHMSFGNN NNNSGQPPVL LRLKEEKITI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-38206412878Probable WRKY transcription factor 4
2lex_A3e-38206412878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g001510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019092681.10.0PREDICTED: probable WRKY transcription factor 58
SwissprotQ93WU70.0WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLR0HLE10.0R0HLE1_9BRAS; Uncharacterized protein
STRINGXP_010463587.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-178WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]