PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g001120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family E2F/DP
Protein Properties Length: 370aa    MW: 41286.5 Da    PI: 9.1772
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g001120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP855.6e-27172252171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     +keksL+ll+q+f+k++ +s+++ +tl+++ak+L+s+     ++++k+RR+YDi+NV++++nliek     ++k+++rw g
  Csa15g001120.1 172 KKEKSLWLLSQNFVKMFLCSDDDLITLDSAAKALLSDsqdpvHMRTKVRRLYDIANVFSSMNLIEKtqipeTKKPAYRWLG 252
                     69********************************************************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-41956IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.7E-422108IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.0E-22170254IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-31172252IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.9E-20173252IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.03E-13174253IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSSSYAMVSQ DAESLALQTY SRKEKSLGLL VSNFLRLYNR DDADLIGLDH AAGKLGPPVS  60
LGDASQTEIV IQDLLSSRHR RAALRSKKEI RALHIVARKG KNMYSWKGFG EVPRSLDKLK  120
EEGMREKLCI SSSNNSDKVL DDVEREESSF SLTPDDQETS SSSKIVSFAD QKKEKSLWLL  180
SQNFVKMFLC SDDDLITLDS AAKALLSDSQ DPVHMRTKVR RLYDIANVFS SMNLIEKTQI  240
PETKKPAYRW LGSESIAETG TSLFNSDEPK KRVFGTEITN LRAKRNKTDC SSNGKQIGYK  300
KHDDENTEQE SKPAASKYVF GPSFPTGAAS KKNENVRKGR LQEIESLAST YKPQYCNKGN  360
NQTQIVTEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-18212443228Transcription factor E2F8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Does not bind retinoblastoma-related proteins. Acts as a growth regulator but is not associated with changes in the expression of cell cycle marker genes or in nuclear ploidy levels. Has no effect on cell proliferation, but may repress cell wall biosynthesis genes during cell elongation in differentiated cells. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15308755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g001120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463536.10.0PREDICTED: E2F transcription factor-like E2FF isoform X1
SwissprotQ8RWL01e-177E2FF_ARATH; E2F transcription factor-like E2FF
TrEMBLR0HMF00.0R0HMF0_9BRAS; Uncharacterized protein
STRINGXP_010463536.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60032547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.11e-178DP-E2F-like protein 3
Publications ? help Back to Top
  1. Dohmann EM, et al.
    The Arabidopsis COP9 signalosome is essential for G2 phase progression and genomic stability.
    Development, 2008. 135(11): p. 2013-22
    [PMID:18434413]